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authorDaniel Baumann <daniel.baumann@progress-linux.org>2017-05-02 04:04:44 +0000
committerDaniel Baumann <daniel.baumann@progress-linux.org>2017-05-02 04:04:44 +0000
commitb7beea28fc4ac0c3e6dd6d859331c82995ed9345 (patch)
treee4a267905260f3c9573ce29eaf3e5ab578c0e4f0
parentAdding upstream version 3.4.0. (diff)
downloadr-base-b7beea28fc4ac0c3e6dd6d859331c82995ed9345.zip
r-base-b7beea28fc4ac0c3e6dd6d859331c82995ed9345.tar.xz
Adding debian version 3.4.0-1.debian/3.4.0-1
Signed-off-by: Daniel Baumann <daniel.baumann@progress-linux.org>
-rw-r--r--debian/R-2.5.0.patch149
-rw-r--r--debian/R.bash-completion499
-rw-r--r--debian/README.Atlas186
-rw-r--r--debian/README.debian13
-rw-r--r--debian/README.mathlib89
-rw-r--r--debian/Renviron-R_LIBS.patch14
-rw-r--r--debian/Renviron.site19
-rw-r--r--debian/Rprofile.site23
-rw-r--r--debian/arm-perl-regexp.patch31
-rw-r--r--debian/build-help.pl27
-rw-r--r--debian/build-help.pl.patch38
-rw-r--r--debian/changelog3629
-rw-r--r--debian/compat1
-rw-r--r--debian/control375
-rw-r--r--debian/copyright660
-rw-r--r--debian/icon-class-patch/R.desktop10
-rw-r--r--debian/icon-class-patch/philip_johnson_email.txt149
-rw-r--r--debian/icon-class-patch/r_icon_class.patch95
-rw-r--r--debian/icon-class-patch/rlogo_icon.png.mpack99
-rw-r--r--debian/javareconf.patch18
-rw-r--r--debian/libR.conf2
-rw-r--r--debian/override-bz2-version-check.patch22
-rw-r--r--debian/papersize.sh19
-rw-r--r--debian/r-base-core-dbg.dirs1
-rw-r--r--debian/r-base-core-dbg.lintian2
-rw-r--r--debian/r-base-core.bash-completion1
-rw-r--r--debian/r-base-core.dirs12
-rw-r--r--debian/r-base-core.files3
-rw-r--r--debian/r-base-core.lintian109
-rw-r--r--debian/r-base-core.maintscript1
-rw-r--r--debian/r-base-core.menu5
-rw-r--r--debian/r-base-core.postinst65
-rw-r--r--debian/r-base-core.preinst34
-rw-r--r--debian/r-base-core.prerm26
-rw-r--r--debian/r-base-core.shlibs.hidden1
-rw-r--r--debian/r-base-dev.dirs1
-rw-r--r--debian/r-base-dev.links1
-rw-r--r--debian/r-base-dev.preinst26
-rw-r--r--debian/r-base-html.files1
-rw-r--r--debian/r-base-latex.dirs1
-rw-r--r--debian/r-base-latex.files1
-rw-r--r--debian/r-base-latex.lintian1
-rw-r--r--debian/r-cran.mk151
-rw-r--r--debian/r-doc-html.doc-base.admin9
-rw-r--r--debian/r-doc-html.doc-base.data9
-rw-r--r--debian/r-doc-html.doc-base.exts11
-rw-r--r--debian/r-doc-html.doc-base.faq10
-rw-r--r--debian/r-doc-html.doc-base.intro17
-rw-r--r--debian/r-doc-html.doc-base.ints10
-rw-r--r--debian/r-doc-html.doc-base.lang11
-rw-r--r--debian/r-doc-html.files1
-rw-r--r--debian/r-doc-html.links7
-rw-r--r--debian/r-doc-html.links.hidden1
-rw-r--r--debian/r-doc-html.preinst32
-rw-r--r--debian/r-doc-info.files1
-rw-r--r--debian/r-doc-pdf.files1
-rw-r--r--debian/r-doc-pdf.links10
-rw-r--r--debian/r-doc-pdf.links.hidden1
-rw-r--r--debian/r-doc-pdf.preinst26
-rw-r--r--debian/r-gnome.NEWS13
-rw-r--r--debian/r-gnome.links1
-rw-r--r--debian/r-gnome.lintian1
-rw-r--r--debian/r-gnome.menu4
-rw-r--r--debian/r-gnome.preinst26
-rw-r--r--debian/r-mathlib.dirs1
-rw-r--r--debian/r-mathlib.files3
-rw-r--r--debian/r-mathlib.links.hidden1
-rw-r--r--debian/r-mathlib.lintian5
-rw-r--r--debian/r-mathlib.postinst27
-rw-r--r--debian/r-mathlib.shlibs.hidden1
-rw-r--r--debian/r-recommended.dirs2
-rw-r--r--debian/r-recommended.files14
-rw-r--r--debian/r-recommended.links1
-rw-r--r--debian/r-recommended.lintian8
-rw-r--r--debian/r-recommended.preinst26
-rw-r--r--debian/reproducibility-patch/R-set-buildstamp-via-INSTALL.patch63
-rw-r--r--debian/reproducibility-patch/R-set-buildstamp-via-MAKE-env-var.patch32
-rwxr-xr-xdebian/rules741
-rw-r--r--debian/rules,v758
-rw-r--r--debian/shlibs.local2
-rw-r--r--debian/shlibs.local.hidden1
-rw-r--r--debian/simulate-buildd10
-rw-r--r--debian/source/format1
-rw-r--r--debian/unused/Renviron-R_PAPERSIZE.patch12
-rw-r--r--debian/unused/control.r-gnome27
-rw-r--r--debian/unused/makeLazyLoad.R.patch79
-rw-r--r--debian/unused/r-gnome.links1
-rw-r--r--debian/unused/r-gnome.lintian1
-rw-r--r--debian/unused/r-gnome.menu4
-rw-r--r--debian/unused/r-gnome.preinst26
-rw-r--r--debian/updated_x11_logo.patch7692
-rw-r--r--debian/watch5
92 files changed, 16356 insertions, 0 deletions
diff --git a/debian/R-2.5.0.patch b/debian/R-2.5.0.patch
new file mode 100644
index 0000000..bcf7b3c
--- /dev/null
+++ b/debian/R-2.5.0.patch
@@ -0,0 +1,149 @@
+diff -uNr R-2.5.0/src/nmath/standalone/Makefile.in R-2.5.0-patched/src/nmath/standalone/Makefile.in
+--- R-2.5.0/src/nmath/standalone/Makefile.in 2007-03-26 18:42:08.000000000 +0200
++++ R-2.5.0-patched/src/nmath/standalone/Makefile.in 2007-04-29 14:50:55.000000000 +0200
+@@ -67,7 +67,7 @@
+ libRmath_la_LDFLAGS =
+
+ CLEANFILES = Makedeps *.d *.o *.lo test $(SOURCES)
+-DISTCLEANFILES = Makefile $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES)
++DISTCLEANFILES = Makefile libRmath.pc $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES)
+
+ DEFS = -DHAVE_CONFIG_H -DMATHLIB_STANDALONE
+ ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) -I$(srcdir)/.. $(CPPFLAGS) $(DEFS)
+@@ -78,7 +78,7 @@
+ @r_cc_lo_rules_frag@
+
+
+-all: Makefile inc static shared
++all: Makefile inc static shared build-pc
+
+ inc:
+ (cd ../../include; $(MAKE) Rmath.h)
+@@ -100,6 +100,11 @@
+ shared: Makefile ../../include/Rconfig.h Copy Makedeps
+ @$(MAKE) $(Rexeclibdir_LTLIBRARIES)
+
++build-pc:
++ @$(SED) -e "s:@libdir:$(libdir):" -e "s:@includedir:$(includedir):" \
++ -e 's/@VERSION/$(VERSION)/' -e 's/@libm/$(LIBM)/' $(srcdir)/libRmath.pc.in \
++ > "libRmath.pc"
++
+ ../../include/Rconfig.h:
+ (cd $(@D); $(MAKE) $(@F))
+
+@@ -163,9 +168,7 @@
+
+ install-pc:
+ @$(MKINSTALLDIRS) "$(libdir)/pkgconfig"
+- @$(SED) -e "s:@libdir:$(libdir):" -e "s:@includedir:$(includedir):" \
+- -e 's/@VERSION/$(VERSION)/' -e 's/@libm/$(LIBM)/' $(srcdir)/libRmath.pc.in \
+- > "$(libdir)/pkgconfig/libRmath.pc"
++ @$(INSTALL_DATA) libRmath.pc "$(libdir)/pkgconfig/libRmath.pc"
+
+ uninstall:
+ @rm -f $(includedir)/Rmath.h $(libdir)/$(libRmath_la) $(libdir)/libRmath.a "$(libdir)/pkgconfig/libRmath.pc"
+diff -uNr R-2.5.0/src/scripts/Makefile.in R-2.5.0-patched/src/scripts/Makefile.in
+--- R-2.5.0/src/scripts/Makefile.in 2007-03-26 18:42:09.000000000 +0200
++++ R-2.5.0-patched/src/scripts/Makefile.in 2007-04-29 14:50:14.000000000 +0200
+@@ -23,17 +23,22 @@
+ DISTFILES = Makefile.in Makefile.win $(SCRIPTS_S) $(SCRIPTS_B_IN) R.sh.in
+
+ CLEANFILES =
+-DISTCLEANFILES = Makefile R.fe R.sh $(SCRIPTS_B)
++DISTCLEANFILES = Makefile R.fe R.fe2 R.sh $(SCRIPTS_B)
+
+ all: Makefile R
+
+ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+ @cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+
+-R: $(SCRIPTS_B) R.fe
++R: $(SCRIPTS_B) R.fe R.fe2
+ @$(MAKE) rhome=$(top_builddir) install-cmds
+ @$(INSTALL_SCRIPT) R.fe $(top_builddir)/bin/R
+
++R.fe2:
++ @(d=`echo '$(rhome)' | sed 's,/,\\\/,g';`; \
++ sed -e "s/\\(R_HOME_DIR=\\).*/\\1$${d}/;" -e "s+\\(R_SHARE_DIR=\\).*+\\1$(rsharedir)+;" -e "s+\\(R_INCLUDE_DIR=\\).*+\\1$(rincludedir)+;" -e "s+\\(R_DOC_DIR=\\).*+\\1$(rdocdir)+;"\
++ < R.fe > $@)
++
+ ## <NOTE>
+ ## Seems we need target rules for creating FOO from FOO.in: pattern
+ ## rules ('%:%.in') are not portable, and some versions of Make do not
+@@ -95,10 +100,8 @@
+
+ install: installdirs install-cmds
+ @rm -f $(bindir)/R
+- @(d=`echo '$(rhome)' | sed 's,/,\\\/,g';`; \
+- sed -e "s/\\(R_HOME_DIR=\\).*/\\1$${d}/;" -e "s+\\(R_SHARE_DIR=\\).*+\\1$(rsharedir)+;" -e "s+\\(R_INCLUDE_DIR=\\).*+\\1$(rincludedir)+;" -e "s+\\(R_DOC_DIR=\\).*+\\1$(rdocdir)+;"\
+- < R.fe > "$(Rexecbindir)/R")
+- @$(INSTALL_SCRIPT) "$(Rexecbindir)/R" "$(bindir)/R"
++ @$(INSTALL_SCRIPT) R.fe2 "$(Rexecbindir)/R"
++ @$(INSTALL_SCRIPT) R.fe2 "$(bindir)/R"
+ @chmod 755 "$(bindir)/R" "$(Rexecbindir)/R"
+ ## why of all the scriots does this alone chmod just one copy?
+ installdirs:
+diff -uNr R-2.5.0/src/unix/Makefile.in R-2.5.0-patched/src/unix/Makefile.in
+--- R-2.5.0/src/unix/Makefile.in 2007-03-26 18:41:33.000000000 +0200
++++ R-2.5.0-patched/src/unix/Makefile.in 2007-04-29 14:51:55.000000000 +0200
+@@ -26,7 +26,7 @@
+
+ @WANT_R_SHLIB_TRUE@ALL_CFLAGS = $(ALL_CFLAGS_LO)
+
+-all: Makefile Makedeps R
++all: Makefile Makedeps R
+
+ Makefile: $(srcdir)/Makefile.in \
+ $(top_builddir)/config.status \
+@@ -38,11 +38,23 @@
+ @cat $(DEPENDS) >> Makefile
+ @touch $@
+
+-R: Makefile
++R: Makefile
+ @$(MAKE) Makedeps
+ @WANT_R_SHLIB_FALSE@ @$(MAKE) libunix.a
+ @WANT_R_SHLIB_TRUE@ @$(MAKE) stamp-lo
++ @$(MAKE) rhome=$(abs_top_builddir) build-Rscript
+ @$(MAKE) rhome=$(abs_top_builddir) install-Rscript
++ @$(MAKE) build-Rscript
++ @$(MAKE) build-pc
++
++build-pc:
++ @$(SED) -e "s:@rhome:$(rhome):" -e "s:@rincludedir:$(rincludedir):" \
++ -e 's/@VERSION/$(VERSION)/' $(srcdir)/libR.pc.in \
++ > "libR.pc"
++
++build-Rscript:
++ $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \
++ $(srcdir)/Rscript.c
+
+ ## is this portable?
+ ../include/Rversion.h:
+@@ -60,22 +72,19 @@
+ clean:
+ @-rm -rf .libs _libs
+ @-rm -f Makedeps *.d *.o *.a *.lo *.la stamp-lo
++ @-rm -f Rscript libR.pc
+ distclean: clean
+ @-rm -f Makefile
+ maintainer-clean: distclean
+
+-## we need to build at install time to capture the correct 'rhome'
++## install previously built Rscript
+ install-Rscript:
+- $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \
+- $(srcdir)/Rscript.c
+ @$(MKINSTALLDIRS) "$(Rexecbindir)"
+ @$(INSTALL_PROGRAM) Rscript "$(Rexecbindir)/Rscript"
+-## substitute at install time to allow 'prefix' to be overridden
++## install previously built libR.pc
+ install-pc:
+ @$(MKINSTALLDIRS) "$(libdir)/pkgconfig"
+- @$(SED) -e "s:@rhome:$(rhome):" -e "s:@rincludedir:$(rincludedir):" \
+- -e 's/@VERSION/$(VERSION)/' $(srcdir)/libR.pc.in \
+- > "$(libdir)/pkgconfig/libR.pc"
++ @$(INSTALL_DATA) libR.pc "$(libdir)/pkgconfig/libR.pc"
+ install: install-Rscript @WANT_R_SHLIB_TRUE@ install-pc
+ @$(MKINSTALLDIRS) "$(bindir)"
+ @$(INSTALL_PROGRAM) Rscript "$(bindir)/Rscript"
diff --git a/debian/R.bash-completion b/debian/R.bash-completion
new file mode 100644
index 0000000..8ca80b5
--- /dev/null
+++ b/debian/R.bash-completion
@@ -0,0 +1,499 @@
+## Copyright (C) 2005-2014 Deepayan Sarkar <Deepayan.Sarkar@R-project.org>
+###
+### This file provides programmable completion for R under the bash
+### shell. It is made available under the terms of the GNU General
+### Public License, version 2, or at your option, any later version,
+### incorporated herein by reference.
+###
+### This program is distributed in the hope that it will be
+### useful, but WITHOUT ANY WARRANTY; without even the implied
+### warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+### PURPOSE. See the GNU General Public License, available at
+### http://www.gnu.org/licenses/licenses.html, for more details.
+
+
+### NOTE: This does NOT provide completion for commands within R, only
+### for R's command-line options. For example,
+###
+### R CMD build --f[TAB]
+###
+### will complete to --force and so on. In other words, this is
+### potentially useful (for the most part) to package developers, not
+### regular users.
+
+### NEWS: Updated for R 2.4.0 (October 2006)
+
+### BUGS: As it stands, this is far from perfect. Known bugs include:
+###
+### (1) Not all mutually exclusive options are properly handled
+###
+### (2) Doesn't test for the existence of R before defining the
+### (2) completion function (not strictly a bug, but definitely not a
+### (2) good feature)
+
+
+### INSTALLATION AND USAGE: You need to first install and enable bash
+### completion on your system to use this script. See
+###
+### http://www.caliban.org/bash/index.shtml#completion
+###
+### to learn more about bash completion. On a modern Debian system,
+### all the necessary files are already installed by the bash package.
+### To enable it, just uncomment the following lines in your .bashrc
+###
+### # if [ "$PS1" -a -f /etc/bash_completion ]; then
+### # . /etc/bash_completion
+### # fi
+###
+### or to try it out in your current shell, type
+###
+### . /etc/bash_completion
+###
+### Once you are using bash completion, you can enable completion for
+### R by similarly sourcing this file. For permanent use, place it in
+### your $BASH_COMPLETION_DIR (/etc/bash_completion.d in Debian). If
+### you don't have access to do that, copy the contents of this file
+### in it's entirety to your ~/.bash_completion, which is sourced by
+### the bash_completion script.
+
+
+
+
+_R()
+{
+ local cur loneOpts helpOpts stdOpts argOpts versOpts cmds cmd furtherOpts
+ local fileNames dirNames i lastToken
+ # local IFS=$'\t\n'
+
+ COMPREPLY=()
+ cur=${COMP_WORDS[COMP_CWORD]}
+
+ loneOpts='--version RHOME'
+ versOpts='-v --version' # only on commands
+ helpOpts='-h --help'
+
+ stdOpts='--save --no-save --no-environ --no-site-file \
+ --no-init-file --restore --no-restore-data --no-restore-history \
+ --no-restore --vanilla --no-readline -q --quiet --silent --slave \
+ --interactive --verbose -d -g --args -f -e'
+
+ ## these should end with a '=' and not be followed by a space.
+ ## Unfortunately, I haven't figured out how to make that work.
+ ## -nospace doesn't suppress the space, and if I add = at the end,
+ ## they get completed as "--debugger\= " etc. Anyway, they are
+ ## kept separate in anticipation of some future fix...
+
+ argOpts='--min-vsize --max-vsize --min-nsize --max-nsize \
+ --encoding --max-ppsize --debugger --debugger-args \
+ --gui --arch --file'
+
+ cmds='BATCH COMPILE SHLIB INSTALL REMOVE build check LINK Rprof \
+ Rdconv Rd2pdf Rd2txt Stangle Sweave Rdiff config javareconf rtags'
+
+
+
+
+ fileNames='' # possible to have files in certain commands (e.g. BATCH)
+ dirNames=''
+
+
+ if [[ $COMP_CWORD -eq 1 ]] ; then
+ COMPREPLY=(
+ $( compgen -W "CMD $loneOpts $helpOpts $stdOpts" -- $cur )
+ $( compgen -o nospace -W "$argOpts" -- $cur )
+ )
+ return 0
+ fi
+
+ ## certain tokens preclude further activity
+ if [[ ${COMP_WORDS[$COMP_CWORD-1]} == @(-v|--version|RHOME|-h|--help) ]] ; then
+ return 0
+ fi
+
+ ## more complicated stuff
+ ## keep last token for use later
+ lastToken=${COMP_WORDS[$COMP_CWORD-1]}
+
+
+ ## if [[ $COMP_CWORD -gt 1 ]] && (implied)
+ if [[ ${COMP_WORDS[1]} == "CMD" ]] ; then
+
+ if [[ $COMP_CWORD -eq 2 ]] ; then
+ COMPREPLY=(
+ $( compgen -W "$cmds" -- $cur )
+ )
+ return 0
+ else
+
+ ## COMP_CWORD >= 3. cmd=${COMP_WORDS[2]} is (hopefully)
+ ## one of $cmds. At this point, all further options
+ ## (except -v|-h|RHOME etc handled above) will be assumed
+ ## repeatable (except for duplicates and exclusives, to be
+ ## handled later). In the next step, possible completions
+ ## for each cmd will be derived.
+
+ ## A largely similar derivation is also needed for the
+ ## case when ${COMP_WORDS[2]} is not CMD. A similar
+ ## completion list will be derived in that case.
+ ## Afterwards, things will be removed from these as
+ ## needed, before the final COMPREPLY is computed.
+
+ cmd=${COMP_WORDS[2]}
+ case $cmd in
+ BATCH)
+
+ ## if last word is a filename (not starting with
+ ## -) then no more options are allowed, but can be
+ ## followed by any file (outfile)
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts $stdOpts $argOpts --no-timing"
+ fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ COMPILE)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts -D"
+ fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ SHLIB)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts -o --output -c --clean \
+ --preclean -n --dry-run"
+ fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+
+ ;;
+
+ INSTALL)
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken == @(-l|--library) ]] ; then
+
+ furtherOpts=""
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ furtherOpts="$versOpts $helpOpts \
+--configure-args --configure-vars -c --clean --preclean -d --debug -l \
+--library --no-configure --no-docs --html --no-html --latex --example \
+--fake --no-lock --lock --pkglock --build --install-tests --no-R \
+--no-libs --no-data --no-help --no-demo --no-exec --no-inst \
+--no-multiarch --libs-only --data-compress --resave-data \
+--compact-docs --with-keep.source --without-keep.source --byte-compile \
+--no-byte-compile --no-test-load --no-clean-on-error --merge-multiarch \
+--built-timestamp"
+ fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ REMOVE)
+ furtherOpts="$versOpts $helpOpts -l --library"
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken == @(-l|--library) ]] ; then
+ dirNames=$( compgen -d -- "$cur" )
+ fi
+ ;;
+
+ build)
+
+ furtherOpts="$versOpts $helpOpts \
+--force --keep-empty-dirs --no-build-vignettes --no-manual --resave-data \
+--no-resave-data --compact-vignettes --md5"
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ check)
+
+ furtherOpts="$versOpts $helpOpts \
+-l --library -o --output \
+--no-clean --no-codoc --no-examples --no-install --no-tests \
+--no-manual --no-vignettes --no-build-vignettes --run-dontrun \
+--run-donttest --use-gct --use-valgrind --timings \
+--install-args --test-dir --check-subdirs --as-cran \
+--extra-arch --multiarch --no-multiarch --force-multiarch"
+
+ fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ LINK)
+ furtherOpts="$versOpts $helpOpts"
+ ;;
+
+ Rprof)
+ furtherOpts="$versOpts $helpOpts --lines --total --self --linesonly --min%total --min%self"
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rdconv)
+
+ furtherOpts="$versOpts $helpOpts -t --type \
+ --encoding --package -o --output --os --OS"
+
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rd2pdf)
+
+ furtherOpts="$versOpts $helpOpts --batch \
+ --no-clean --no-preview --encoding --outputEncoding \
+ --os --OS -o --output --force --title \
+ --no-index --no-description --internals"
+
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Rd2txt)
+ furtherOpts="$versOpts $helpOpts -t --type --encoding --package -o --output --os --OS"
+ fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ Sweave)
+
+ ## if last word is a filename (not starting with
+ ## -) then nothing more is allowed
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --driver --engine --encoding --options --pdf --compact"
+ fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw|Rmd|rmd)' -- "$cur" )
+ dirNames=""
+ ## dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ Stangle)
+
+ ## if last word is a filename (not starting with
+ ## -) then nothing more is allowed
+
+ if [[ $COMP_CWORD -gt 3 ]] && \
+ [[ $lastToken != -* ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --engine --encoding --options"
+ fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw|Rmd|rmd)' -- "$cur" )
+ dirNames=""
+ ## dirNames=$( compgen -d -- "$cur" )
+
+ fi
+ ;;
+
+ config)
+
+ if [[ $COMP_CWORD -gt 3 ]] ; then
+
+ return 0
+
+ else
+
+ furtherOpts="$versOpts $helpOpts --ldflags --cppflags \
+--no-user-files --no-site-files \
+BLAS_LIBS CC CFLAGS CPICFLAGS CPP CPPFLAGS CXX CXXCPP CXXFLAGS \
+CXXPICFLAGS DYLIB_EXT DYLIB_LD DYLIB_LDFLAGS F77 FFLAGS FLIBS \
+FPICFLAGS FC FCFLAGS FCPICFLAGS JAR JAVA JAVAC JAVAH JAVA_HOME \
+JAVA_LIBS JAVA_CPPFLAGS LAPACK_LIBS LIBnn LDFLAGS OBJC OBJCFLAGS MAKE \
+SAFE_FFLAGS SHLIB_CFLAGS SHLIB_CXXLD SHLIB_CXXLDFLAGS SHLIB_EXT \
+SHLIB_FFLAGS SHLIB_LD SHLIB_LDFLAGS SHLIB_FCLD SHLIB_FCLDFLAGS \
+TCLTK_CPPFLAGS TCLTK_LIBS"
+
+ fi
+ ;;
+
+
+ javareconf)
+ furtherOpts="$versOpts $helpOpts -n --dry-run -e"
+ ;;
+
+
+ rtags)
+ furtherOpts="$versOpts $helpOpts -o --output --no-c --no-R \
+ --no-Rd -a --append -V --verbose"
+ dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ esac
+
+ fi
+
+ elif [[ $lastToken == "<" ]] ; then
+
+ ## R [options] < <need .R file here>
+ furtherOpts=""
+ fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ elif [[ $lastToken == ">" ]] ; then
+
+ ## R [options] > <need output file here>
+ furtherOpts=""
+ fileNames=$( compgen -f -- "$cur" )
+ dirNames=$( compgen -d -- "$cur" )
+
+ else
+
+ case $lastToken in
+
+ -g|--gui)
+ furtherOpts="X11 Tk"
+ ;;
+ -d|--debugger) ## allow commands
+ furtherOpts=$( compgen -c -- "$cur" )
+ ;;
+
+ -f|--file)
+ fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
+ dirNames=""
+ ## dirNames=$( compgen -d -- "$cur" )
+ ;;
+
+ *) ## NOT 'R CMD <something> ': see comments above
+ furtherOpts="$versOpts $helpOpts $stdOpts $argOpts" ;;
+
+ esac
+ fi
+
+ ## need some removal
+
+ ## take out options already given
+ for (( i=1; i<=$COMP_CWORD-1; ++i )) ; do
+
+ opt=${COMP_WORDS[$i]}
+
+ case $opt in
+ --*) optBase=${opt/=*/} ;;
+ -*) optBase=${opt:0:2} ;;
+ esac
+
+ ## can't seem to do this using case
+ if [[ $opt == "<" ]] ; then
+ ## no more args allowed
+ furtherOpts=""
+ elif [[ $opt == ">" ]] ; then
+ ## no more args allowed
+ furtherOpts=""
+ fi
+
+
+ allOpts=" $furtherOpts "
+ allOpts=${allOpts/ ${optBase} / }
+
+ #echo $allOpts
+
+ ## take out alternatives and mutually exclusives
+ case $optBase in
+
+# not working
+# "<") ## only filenames allowed
+# echo "-----------"
+# allOpts=">" ;;
+# ">") ## only filenames allowed
+# allOpts="<" ;;
+
+ -q|--quiet|--silent)
+ allOpts=${allOpts/ -q / }
+ allOpts=${allOpts/ --quiet / }
+ allOpts=${allOpts/ --silent / }
+ #echo $allOpts
+
+ ;;
+ --save|--no-save)
+ allOpts=${allOpts/ --save / }
+ allOpts=${allOpts/ --no-save / }
+ ;;
+ --vanilla)
+ allOpts=${allOpts/ --no-save / }
+ allOpts=${allOpts/ --no-restore / }
+ allOpts=${allOpts/ --no-site-file / }
+ allOpts=${allOpts/ --no-init-file / }
+ allOpts=${allOpts/ --no-environ / }
+ ;;
+ -d) allOpts=${allOpts/ --debugger / } ;;
+ --debugger) allOpts=${allOpts/ -d / } ;;
+ --restore) allOpts=${allOpts/ --no-restore / } ;;
+ --no-restore) allOpts=${allOpts/ --restore / } ;;
+ -g|--gui)
+ allOpts=${allOpts/ -g / }
+ allOpts=${allOpts/ --gui / }
+ ;;
+
+ BATCH)
+ allOpts=${allOpts/ --restore / }
+ allOpts=${allOpts/ --save / }
+ allOpts=${allOpts/ --no-readline / }
+ ;;
+
+ esac
+
+ done
+
+ ## and finally:
+
+ COMPREPLY=(
+ $( compgen -W "$allOpts $fileNames $dirNames" -- $cur )
+ )
+ return 0
+
+
+}
+
+complete -F _R -o default R
+
+## Add more aliases here, e.g.
+
+# for e in R-devel R-patched; do complete -F _R -o default ${e}; done
+
+
+
+### Local variables:
+### mode: shell-script
+### End:
diff --git a/debian/README.Atlas b/debian/README.Atlas
new file mode 100644
index 0000000..8e29236
--- /dev/null
+++ b/debian/README.Atlas
@@ -0,0 +1,186 @@
+
+ Notes on using Atlas libs with GNU Octave and GNU R
+
+I. Overview
+===========
+
+As of the Debian releases 2.1.34-6 (for GNU Octave) and 1.3.0-3 (for GNU R),
+both Octave and R can be used with Atlas, the Automatically Tuned Linear
+Algebra Software, in order to obtain much faster linear algebra operations.
+
+To make use of Atlas, Debian users need to install the Atlas libraries for
+their given cpu architecture. Concretely, one of
+
+ libatlas3gf-base - Automatically Tuned Linear Algebra Software, generic
+ libatlas3gf-sse - Automatically Tuned Linear Algebra Software, SSE1
+ libatlas3gf-sse2 - Automatically Tuned Linear Algebra Software, SSE2
+ libatlas3gf-3dnow - Automatically Tuned Linear Algebra Software, 3dnow
+
+must be installed. Here, 'base' provides generic libraries which run on all
+platforms whereas 'sse' and 'sse2' stand for the SSE (v1 and v2) extension
+available on most Intel cpus, and '3dnow' for those made by AMS.
+
+The Atlas libraries can be loaded dynamically instead of the (non-optimised)
+blas and lapack libraries against which both Octave and R are compiled.
+
+Section III below briefly describes how Atlas libraries can be compiled for
+your specific machine to further optimise performance.
+
+
+II. Using the Atlas libraries
+=============================
+
+II.A New default behaviour with automatic loading of the Atlas libraries
+------------------------------------------------------------------------
+
+Users have to make no changes whatsoever as the Atlas library will be loaded
+instead of the standard blas and lapack libraries.
+
+An example such as the script below can be useful to test the performance.
+
+II.B Old behaviour requiring LD_LIBRARY_PATH for Octave
+-------------------------------------------------------
+
+[ NB: This section has long been obsolete is kept for the historical record
+ only. ]
+
+For Octave, use the variable LD_LIBRARY_PATH. On a computer with the
+atlas2-base package:
+
+ $ LD_LIBRARY_PATH=/usr/lib/atlas octave2.1 -q
+ octave2.1:1> X=randn(1000,1000);t=cputime();Y=X'*X;cputime-t
+ ans = 7.9600
+
+ $ edd@homebud:~> octave2.1 -q
+ octave2.1:1> X=randn(1000,1000);t=cputime();Y=X'*X;cputime-t
+ ans = 61.520
+
+For R version 1.3.0-4, the R_LD_LIBRARY_PATH variable has to be used, and its
+value needs to be copied out of /usr/bin/R (or edited therein). For R version
+1.3.1 or later this is done automatically in the R startup shell script. For
+an Athlon machine, and with the explicit definition which is no longer needed
+as of R 1.3.1, the example becomes
+
+ $ R_LD_LIBRARY_PATH=/usr/lib/R/bin:/usr/local/lib:/usr/X11R6/lib:/usr/lib/3dnow/atlas:/usr/lib:/usr/X11R6/lib:/usr/lib/gcc-lib/i386-linux/2.95.4:. R --vanilla -q
+ > mm <- matrix(rnorm(10^6), ncol = 10^3)
+ > system.time(crossprod(mm))
+ [1] 2.38 0.04 2.84 0.00 0.00
+
+ $ R --vanilla -q
+ > mm <- matrix(rnorm(10^6), ncol = 10^3)
+ > system.time(crossprod(mm))
+ [1] 28.28 0.08 33.54 0.00 0.00
+ >
+
+Running such a small example is highly recommded to ascertain that the
+libraries are indeed found, and to "prove" that the speed gain is real (and
+significant) for problems of at least a medium size as the 1000x1000 examples
+above.
+
+Note that the example use "/usr/lib/atlas" for the atlas2-base package;
+Athlon users should employ "/usr/lib/3dnow/atlas", Pentium III users should
+employ "/usr/lib/xmm/atlas" and Pentium IV users should employ
+"/usr/lib/26/atlas".
+
+Lastly, it should be pointed out that it is probably worthwhile to locally
+compile, and thereby optimise, the Atlas libraries if at least a moderately
+intensive load is expected. This is described in the next section.
+
+
+III. Locally compiling the Atlas libraries
+==========================================
+
+The Debian Atlas packages have been setup to allow for local recompilation of
+the Atlas libraries. This way the behaviour will be tuned exactly to the
+specific CPU rather than the broader class of CPUs. It has been reported that
+this can increase performance by a further 12% on the examples above.
+Detailed instructions are in /usr/share/doc/atlas2-base/README.debian.gz but
+the process is essentially the following [ courtesy of Doug Bates ]
+
+ apt-get source libatlas3gf-base
+ cd atlas-$VERSION
+ fakeroot debian/rules custom
+ # wait for a *very* long time
+ dpkg -i ../libatlas3gf-base*.deb
+
+
+IV. See also
+=============
+
+The Atlas packages have a very detailed README.Debian file which should be
+consulted; it also details local recompilation. Sources and documentation for
+Atlas are at http://www.netlib.org/atlas.
+
+
+V. Acknowledgements
+====================
+
+Camm Maguire developed the scheme of overloading Atlas over the default blas
+libraries and deserves all the credit. Many thanks to John Eaton for helping
+debug some errors in the initial setup, and to Doug Bates for work on the R
+package. Special thanks to Ben Collins for providing a patched ldconfig as
+part of the libc6 package.
+
+
+VI. Appendix
+============
+
+A simple test script such as the following
+
+-----------------------------------------------------------------------------
+#!/bin/sh
+
+# remove Atlas et al
+sudo dpkg --purge libatlas3gf-base > /dev/null
+dpkg -l | grep "blas\|lapack\|atlas"
+
+: ${SIZE=1500}
+: ${REPS=20}
+r_cmd="m<-matrix(rnorm(${SIZE}*${SIZE}),ncol=${SIZE}); cat(mean(replicate($REPS,system.time(crossprod(m))[1]),trim=0.1),'\n')"
+
+echo ""
+echo "GNU R: $r_cmd"
+echo -n " Without Atlas: "
+echo -n "$r_cmd" | R --vanilla --slave
+
+sudo apt-get install libatlas3gf-base > /dev/null
+echo -n " With Atlas base : "
+echo -n "$r_cmd" | R --vanilla --slave
+
+sudo dpkg --purge libatlas3gf-base > /dev/null
+sudo apt-get install libatlas3gf-sse > /dev/null
+echo -n " With Atlas sse : "
+echo -n "$r_cmd" | R --vanilla --slave
+
+sudo dpkg --purge libatlas3gf-sse > /dev/null
+sudo apt-get install libatlas3gf-sse2 > /dev/null
+echo -n " With Atlas sse2 : "
+echo -n "$r_cmd" | R --vanilla --slave
+
+sudo dpkg --purge libatlas3gf-sse2 > /dev/null
+-----------------------------------------------------------------------------
+
+can be used to test the setup. On a dual Xeon running Debian testing (x86, ie
+32bit) in May 2009, I see the following output:
+
+GNU R: m<-matrix(rnorm(1500*1500),ncol=1500); cat(mean(replicate(20,system.time(crossprod(m))[1]),trim=0.1),'\n')
+ Without Atlas: 4.146438
+ With Atlas base : 1.788125
+ With Atlas sse : 1.573625
+ With Atlas sse2 : 0.8465625
+
+indicating about a three-fold increase in speed for the 'base' version and
+even a five-fold increase for the sse2 version.
+
+
+VI. Revision History
+====================
+
+Initial version
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 21 Aug 2001 21:37:15 -0500
+
+First updated
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 11 Nov 2001 11:03:19 -0600
+
+Major update
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 31 May 2009 21:04:47 -0500
diff --git a/debian/README.debian b/debian/README.debian
new file mode 100644
index 0000000..82c686c
--- /dev/null
+++ b/debian/README.debian
@@ -0,0 +1,13 @@
+r-base for DEBIAN
+----------------------
+
+This Debian package was created from the sources on the Comprehensive R Archive
+Network sites. The master site is http://cran.r-project.org/
+
+Douglas Bates <bates@stat.wisc.edu>, Wed, 10 Dec 1997 14:17:31 -0600
+
+The executable is called R.
+
+In accordance with the Debian package policy, the executable,
+/usr/lib/R/bin/R.binary, has been stripped. Trying to use the --debugger
+option to R may not be as useful as hoped.
diff --git a/debian/README.mathlib b/debian/README.mathlib
new file mode 100644
index 0000000..3aa5034
--- /dev/null
+++ b/debian/README.mathlib
@@ -0,0 +1,89 @@
+
+The Debian package r-mathlib provides the library of standalone mathematical
+functions from the GNU R sources.
+
+Please consult the header file Rmath.h for the full list of available
+functions, and see section "The R API", subection "Using these functions in
+your own code" from the "Writing R Extensions" manual (available in pdf, html
+and info in the r-doc-pdf, r-doc-html and r-doc-info packages, respectively)
+for their usage.
+
+A simple example is provided in the file test.c which, on a Debian system,
+can be built as
+ $ gcc test.c -o test_mathlib -lRmath -lm
+Running 'ldd test_mathlib' can verify that the library is linked dynamically.
+
+The full README for the source directory R-$VERSION/src/nmath/standalone is
+included below; you can safely ignore the part about building this library as
+it provided by the Debian r-mathlib package.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 13 Jun 2002 21:27:38 -0500
+
+
+----- file R-$VERSION/src/nmath/standalone/README below ---------------------
+
+If you have not yet made R, under Unix you must first configure R, and
+under Windows you need to set up almost all the tools to make R and
+then run (cd .../src/gnuwin32/fixed; make).
+
+
+Under Unix, making in this directory will make standalone libraries
+libRmath.a and libRmath.so. `make static' and `make shared' make
+just one of them.
+
+Under Windows, use make -f Makefile.win. This makes Rmath.dll with
+import library libRmath.a.
+
+NB: certain compilers are unable to do compile-time IEEE-754
+arithmetic and so cannot compile mlutils.c. The known example is
+Sun's cc. Use gcc for mlutils.c (or the whole library).
+
+
+To use the routines in your own C or C++ programs, include
+
+#define MATHLIB_STANDALONE
+#include <Rmath.h>
+
+and link against -lRmath. The example file test.c does nothing
+useful, but is provided to test the process. Note that you will
+probably not be able to run it unless you add the directory containing
+libRmath.so to the LD_LIBRARY_PATH.
+
+
+A little care is needed to use the random-number routines. You will
+need to supply the uniform random number generator
+
+ double unif_rand(void)
+
+or use the one supplied (and with a shared library or DLL you will
+have to use the one supplied, which is the Marsaglia-multicarry with
+an entry point
+
+ set_seed(unsigned int, unsigned int)
+
+to set its seeds).
+
+The facilties to change the normal random number generator are
+available through the constant N01_kind. This takes values
+from the enumeration type
+
+typedef enum {
+ KINDERMAN_RAMAGE,
+ AHRENS_DIETER,
+ BOX_MULLER
+} N01type;
+
+(and USER_NORM is not available).
+
+
+There is full access to R's handling of NaNs, Inf and -Inf via special
+versions of the macros and functions
+
+ ISNAN, R_FINITE, R_log, R_pow and R_pow_di
+
+and (extern) constants R_PosInf, R_NegInf and NA_REAL. These
+facilities work best on IEEE 754 machines, but are available for all.
+
+There is no support for R's notion of missing values, in particular
+not for NA_INTEGER nor the distinction between NA and NaN for doubles.
+
diff --git a/debian/Renviron-R_LIBS.patch b/debian/Renviron-R_LIBS.patch
new file mode 100644
index 0000000..e06d5b2
--- /dev/null
+++ b/debian/Renviron-R_LIBS.patch
@@ -0,0 +1,14 @@
+--- Renviron.orig 2003-04-04 06:52:22.000000000 -0500
++++ Renviron 2003-04-04 06:49:05.000000000 -0500
+@@ -33,6 +33,11 @@
+ PERL=${PERL-'/usr/bin/perl'}
+ TAR=${TAR-'tar'}
+
++# edd Apr 2003 Allow local install in /usr/local, also add a directory for
++# Debian packaged CRAN packages, and finally the default dir
++# edd Jul 2007 Now use R_LIBS_SITE, not R_LIBS
++R_LIBS_SITE=${R_LIBS_SITE-'/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library'}
++
+ ### Local Variables: ***
+ ### mode: sh ***
+ ### sh-indentation: 2 ***
diff --git a/debian/Renviron.site b/debian/Renviron.site
new file mode 100644
index 0000000..ed6fe2a
--- /dev/null
+++ b/debian/Renviron.site
@@ -0,0 +1,19 @@
+## Emacs please make this -*- R -*-
+## empty Renviron.site for R on Debian
+##
+## Copyright (C) 2008 Dirk Eddelbuettel and GPL'ed
+##
+## see help(Startup) for documentation on ~/.Renviron and Renviron.site
+
+# ## Example ~/.Renviron on Unix
+# R_LIBS=~/R/library
+# PAGER=/usr/local/bin/less
+
+# ## Example .Renviron on Windows
+# R_LIBS=C:/R/library
+# MY_TCLTK="c:/Program Files/Tcl/bin"
+
+# ## Example of setting R_DEFAULT_PACKAGES (from R CMD check)
+# R_DEFAULT_PACKAGES='utils,grDevices,graphics,stats'
+# # this loads the packages in the order given, so they appear on
+# # the search path in reverse order.
diff --git a/debian/Rprofile.site b/debian/Rprofile.site
new file mode 100644
index 0000000..f44b62a
--- /dev/null
+++ b/debian/Rprofile.site
@@ -0,0 +1,23 @@
+## Emacs please make this -*- R -*-
+## empty Rprofile.site for R on Debian
+##
+## Copyright (C) 2008 Dirk Eddelbuettel and GPL'ed
+##
+## see help(Startup) for documentation on ~/.Rprofile and Rprofile.site
+
+# ## Example of .Rprofile
+# options(width=65, digits=5)
+# options(show.signif.stars=FALSE)
+# setHook(packageEvent("grDevices", "onLoad"),
+# function(...) grDevices::ps.options(horizontal=FALSE))
+# set.seed(1234)
+# .First <- function() cat("\n Welcome to R!\n\n")
+# .Last <- function() cat("\n Goodbye!\n\n")
+
+# ## Example of Rprofile.site
+# local({
+# # add MASS to the default packages, set a CRAN mirror
+# old <- getOption("defaultPackages"); r <- getOption("repos")
+# r["CRAN"] <- "http://my.local.cran"
+# options(defaultPackages = c(old, "MASS"), repos = r)
+#})
diff --git a/debian/arm-perl-regexp.patch b/debian/arm-perl-regexp.patch
new file mode 100644
index 0000000..5687c50
--- /dev/null
+++ b/debian/arm-perl-regexp.patch
@@ -0,0 +1,31 @@
+--- r-base-2.15.2.orig/src/library/tools/R/install.R
++++ r-base-2.15.2/src/library/tools/R/install.R
+@@ -54,7 +54,11 @@
+ SHLIB_EXT <- if (WINDOWS) ".dll" else {
+ ## can we do better?
+ mconf <- file.path(R.home(), paste0("etc", rarch), "Makeconf")
+- sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE))
++ if (substr( Sys.info()["machine"], 1, 3) == "arm") { # arm has broken regexps in libc
++ sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE), perl = TRUE)
++ } else {
++ sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE))
++ }
+ }
+
+ options(warn = 1)
+@@ -1616,8 +1620,13 @@
+ mconf <- readLines(file.path(R.home(),
+ paste0("etc", Sys.getenv("R_ARCH")),
+ "Makeconf"))
+- SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE))
+- SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE))
++ if (substr( Sys.info()["machine"], 1, 3) == "arm") { # arm has broken regexps in libc
++ SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE), perl = TRUE)
++ SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE), perl = TRUE)
++ } else {
++ SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE))
++ SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE))
++ }
+ MAKE <- Sys.getenv("MAKE")
+ rarch <- Sys.getenv("R_ARCH")
+ } else {
diff --git a/debian/build-help.pl b/debian/build-help.pl
new file mode 100644
index 0000000..51b4276
--- /dev/null
+++ b/debian/build-help.pl
@@ -0,0 +1,27 @@
+#!/usr/bin/perl -w
+#
+# Under Debian, R add-on packages (i.e. any of the r-cran-* packages)
+# used to call 'build-help.pl' in postinst and postrm:
+# /usr/bin/R CMD perl /usr/lib/R/share/perl/build-help.pl --htmllists
+#
+# However, R changed upstream and html help indices are created on the fly
+# when the user calls help.start() from within R. With that, the call above
+# is no longer needed and has been phased out in most but not yet all of
+# the postinst and postrm scripts.
+#
+# Moreover, starting with R 2.2.1-3, architecture-independent files are placed
+# below /usr/share/R/ --- breaking the call above. 2.2.1-4 introduced a
+# symbolic link from /usr/share/R/share to /usr/lib/R/share which works
+# on fresh installs but fails on upgrades from older versions of the R
+# package as dpkg cannot replace an existing directory with a softlink.
+#
+# Hence the need for this empty script to provide a place holder until
+# all r-cran-*, r-omegahat-*, r-other-*, ... packages have been updated.
+#
+# Dirk Eddelbuettel <edd@debian.org> 06 Feb 2005
+#
+
+use strict;
+
+print STDERR "Ignoring deprecated call to build-help.pl from postinst or postrm script.\n";
+exit 0;
diff --git a/debian/build-help.pl.patch b/debian/build-help.pl.patch
new file mode 100644
index 0000000..a2854dd
--- /dev/null
+++ b/debian/build-help.pl.patch
@@ -0,0 +1,38 @@
+--- build-help.pl.orig 2005-07-27 15:10:08.000000000 -0500
++++ build-help.pl 2005-09-28 20:28:08.000000000 -0500
+@@ -17,6 +17,10 @@
+ # writing to the Free Software Foundation, Inc., 59 Temple Place,
+ # Suite 330, Boston, MA 02111-1307 USA.
+
++# edd Sep 2005 R 2.2.0 no longer supports (or needs) --htmllists, yet all
++# of the r-cran-* postinst still call it so we need this patch
++# implementing a null-op function to show it is recognised.
++
+ use File::Basename;
+ use Cwd;
+ use Getopt::Long;
+@@ -33,11 +37,12 @@
+ ($name = $0) =~ s|.*/||;
+
+ @knownoptions = ("rhome:s", "html", "txt", "latex", "example", "debug|d",
+- "dosnames", "help|h", "version|v", "os|OS:s",
++ "dosnames", "help|h", "version|v", "os|OS:s", "htmllists",
+ "index");
+ GetOptions (@knownoptions) || usage();
+ &R_version($name, $version) if $opt_version;
+ &usage() if $opt_help;
++htmllists() if $opt_htmllists;
+
+ $OSdir ="unix";
+ $OSdir = $opt_os if $opt_os;
+@@ -268,3 +273,10 @@
+ END
+ exit 0;
+ }
++
++sub htmllists {
++ print STDERR <<END;
++Ignoring deprecated option --htmllists called from postinst or postrm script.
++END
++ exit 0;
++}
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..56377f8
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,3629 @@
+r-base (3.4.0-1) unstable; urgency=medium
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 21 Apr 2017 05:03:24 -0500
+
+r-base (3.3.3.20170413-1) unstable; urgency=medium
+
+ * Initial rc build (r72510) of R 3.4.0 expected for April 21
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 13 Apr 2017 22:43:25 -0500
+
+r-base (3.3.3.20170406-1) experimental; urgency=medium
+
+ * Initial beta build (r72492) of R 3.4.0 expected for April 21
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 06 Apr 2017 21:03:42 -0500
+
+r-base (3.3.3-1) unstable; urgency=medium
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 06 Mar 2017 05:06:20 -0600
+
+r-base (3.3.2.20170227-1) unstable; urgency=medium
+
+ * Initial rc build (r72279) of R 3.3.3 expected for March 6
+
+ * debian/control: Package r-base-dev now Depends: on pkg-config
+
+ * debian/r-cran.mk: xvfb-run now turns on GL extensions
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 27 Feb 2017 20:01:43 -0600
+
+r-base (3.3.2-1) unstable; urgency=medium
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 31 Oct 2016 06:04:25 -0500
+
+r-base (3.3.1.20161024-1) unstable; urgency=medium
+
+ * Initial rc build (r71578) of R 3.3.2 expected for October 31
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 24 Oct 2016 20:59:54 -0500
+
+r-base (3.3.1.20161020-1) unstable; urgency=medium
+
+ * Initial beta build (r71547) of R 3.3.2 expected for October 31
+
+ * debian/rules: Tweaks to configure-stamp dependency (cf #812544)
+
+ * debian/r-base-core.maintscript: Move bash-completion config file from
+ old location, if still present (Closes: #840506)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 20 Oct 2016 21:51:13 -0500
+
+r-base (3.3.1-2) unstable; urgency=medium
+
+ * Rebuilding under gcc-6
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 12 Aug 2016 12:23:55 -0500
+
+r-base (3.3.1-1.xenial.0) xenial; urgency=medium
+
+ * PPA build for Ubuntu 16.04 ("xenial")
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 22 Jun 2016 10:46:47 -0500
+
+r-base (3.3.1-1) unstable; urgency=medium
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 21 Jun 2016 05:16:41 -0500
+
+r-base (3.3.0.20160615-1) unstable; urgency=medium
+
+ * Initial rc build (r70789) of R 3.3.1 expected for June 23
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 15 Jun 2016 20:04:57 -0500
+
+r-base (3.3.0-2) unstable; urgency=medium
+
+ * debian/control: Add libicu-dev to Depends: for r-base-dev
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 19 May 2016 07:35:03 -0500
+
+r-base (3.3.0-1) unstable; urgency=medium
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 03 May 2016 06:05:36 -0500
+
+r-base (3.2.5.20160429-1) unstable; urgency=medium
+
+ * Second rc build (r70561) of R 3.3.0 expected for May 03
+
+ * debian/control: Remove remaining use of gcc-4.9 on mips (Closes: #818781)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 29 Apr 2016 06:22:06 -0500
+
+r-base (3.2.5.20160428-1) unstable; urgency=low
+
+ * Initial rc build (r70556) of R 3.3.0 expected for May 03
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 28 Apr 2016 06:42:20 -0500
+
+r-base (3.2.5-1) unstable; urgency=low
+
+ * New upstream release made today (as the version scheme in
+ 3.2.4-revised created issues for some systems)
+
+ * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
+ devX11.c and rlogo_icon.h to provide the new R logo
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 14 Apr 2016 11:58:11 -0500
+
+r-base (3.2.4.20160412-1) unstable; urgency=low
+
+ * Fourth beta build (r70470) of R 3.3.0 expected for May 03
+
+ * debian/rules: Remove gcc-4.9 invocation for mips (Closes: #818781)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 12 Apr 2016 22:06:54 -0500
+
+r-base (3.2.4.20160411-1) unstable; urgency=low
+
+ * Third beta build (r70465) of R 3.3.0 expected for May 03
+
+ * debian/control: Remove use of gcc-4.9 on mips (Closes: #818781)
+
+ * debian/r-core.shlibs: Removed (Closes: #819343)
+ * debian/r-mathlib.shlibs: Ditto
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 11 Apr 2016 22:13:07 -0500
+
+r-base (3.2.4.20160406-1) unstable; urgency=medium
+
+ * Second beta build (r70427) of R 3.3.0 now expected for May 03
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 06 Apr 2016 09:00:27 -0500
+
+r-base (3.2.4.20160331-1) unstable; urgency=medium
+
+ * Initial beta build (r70404) of R 3.3.0 expected for April 14
+
+ * debian/r-cran.mk: Also remove LICENSE (Closes: #819344)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 31 Mar 2016 19:43:27 -0500
+
+r-base (3.2.4-revised-1) unstable; urgency=medium
+
+ * New upstream release this afternoon
+
+ * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
+ devX11.c and rlogo_icon.h to provide the new R logo
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 16 Mar 2016 16:40:51 -0500
+
+r-base (3.2.4-1) unstable; urgency=medium
+
+ * New upstream version released this morning
+
+ * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
+ devX11.c and rlogo_icon.h to provide the new R logo
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 10 Mar 2016 06:04:56 -0600
+
+r-base (3.2.3.20160306-1) unstable; urgency=medium
+
+ * Second rc build (r70278) of R 3.2.4 expected for March 10
+
+ * debian/rules: Do not install bash_completion in /etc (Closes: #816531)
+
+ * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
+ devX11.c and rlogo_icon.h to provide the new R logo
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 04 Mar 2016 06:29:56 -0600
+
+r-base (3.2.3.20160303-1) unstable; urgency=low
+
+ * Initial rc build (r70270) of R 3.2.4 expected for March 10
+
+ * debian/rules: Adding 'R_TEXI2DVICMD=emulation' to cope with texinfo 6.1
+
+ * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
+ devX11.c and rlogo_icon.h to provide the new R logo
+
+ * debian/rules: Commented-out make check with does not find packages
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 03 Mar 2016 21:01:10 -0600
+
+r-base (3.2.3-6) unstable; urgency=low
+
+ * Rebuilding to now use openjdk-8-jdk (rather than openjdk-7-jdk) as
+ keep in sync with the change at the default-jdk package
+
+ * debian/rules: Added explicit 'cd doc/manual && $(MAKE) html)'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 18 Feb 2016 07:00:11 -0600
+
+r-base (3.2.3-5) unstable; urgency=low
+
+ * debian/icon-class-patch/R.desktop: Add trailing ';' in Categories
+ (with thanks to Pino Toscano) (Closes: #812475)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 24 Jan 2016 21:04:36 -0600
+
+r-base (3.2.3-4) unstable; urgency=low
+
+ * debian/r-base-core.postinst: Don't run mktexlsr
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 13 Jan 2016 22:14:27 -0600
+
+r-base (3.2.3-3) unstable; urgency=low
+
+ * debian/control: Also add 'gcc-4.9 [mips]' to Depends: for r-base-core
+ to ensure compiler is present on installed system (thanks, Sébastien)
+
+ * debian/rules: Set 'R_GZIPCMD=gzip -n' to avoid a Lintian warning about
+ gzip files with timestamps
+
+ * debian/rules: No longer install menu file (and we have a desktop file)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 12 Jan 2016 12:51:40 -0600
+
+r-base (3.2.3-2) unstable; urgency=low
+
+ [ Sébastien Villemot ]
+ * Use gcc-4.9 to compile C code on mips, as a workaround to a gcc-5 bug.
+ (Closes: #810357).
+ * Enable back optimization flags on mips and mipsel.
+
+ [ Dirk Eddelbuettel ]
+ * debian/control: Use Sebastien's patch and add gcc-4.9 for mips
+ * debian/rules: Use Sebastien's patch and enforce gcc-4.9 for mips, also
+ comment-out remaining suppression of optmization
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 10 Jan 2016 21:22:03 -0600
+
+r-base (3.2.3-1.wily.0) wily; urgency=low
+
+ * PPA build for Ubuntu 15.10 ("wily")
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 14 Dec 2015 13:08:31 -0600
+
+r-base (3.2.3-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
+ devX11.c and rlogo_icon.h to provide the new R logo
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 10 Dec 2015 06:31:10 -0600
+
+r-base (3.2.2.20151203-1) unstable; urgency=low
+
+ * Initial rc build (r69731) of R 3.2.3 expected for December 10
+
+ * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
+ devX11.c and rlogo_icon.h to provide the new R logo
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 03 Dec 2015 22:08:11 -0600
+
+r-base (3.2.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/updated_x11_logo.patch: Applied to refresh bitmap'ed logo; now
+ using second patch with reduced memory footprint and resolution
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 14 Aug 2015 05:12:26 -0500
+
+r-base (3.2.1.20150808-1vivid2) vivid; urgency=low
+
+ * PPA build for Ubuntu 15.04 ("vivid")
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 10 Aug 2015 11:56:02 -0500
+
+r-base (3.2.1.20150808-1) unstable; urgency=low
+
+ * Initial rc build (r68909) of R 3.2.2 expected for August 14
+
+ * debian/R.bash-completion: Updated from Deepayan's GH repo
+
+ * debian/updated_x11_logo.patch: Applied to refresh bitmap'ed logo; now
+ using second patch with reduced memory footprint and resolution
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 08 Aug 2015 11:24:33 -0500
+
+r-base (3.2.1.20150804-1) unstable; urgency=low
+
+ * Initial beta build (r68823) of R 3.2.2 expected for August 14
+
+ * debian/updated_x11_logo.patch: Applied to refresh bitmap'ed logo
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 04 Aug 2015 16:24:59 -0500
+
+r-base (3.2.1-4) unstable; urgency=low
+
+ * src/main/datetime.c: One more change for the additional leapsecond
+
+ * debian/control: Add ca-certificates to Depends: for r-base-core to
+ support https via method "libcurl"
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 03 Jul 2015 03:40:19 -0500
+
+r-base (3.2.1-3) unstable; urgency=low
+
+ * src/library/base/R/zdatetime.R: Added additional leap second (also
+ included in R-patched and R-devel)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 01 Jul 2015 02:47:09 -0500
+
+r-base (3.2.1-2) unstable; urgency=low
+
+ * configure: Apply patch by Martin Michlmayr to ensure texi2any version
+ 6 or later is not wrongly rejected as too old (Closes: #790436)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 29 Jun 2015 12:13:49 -0500
+
+r-base (3.2.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 18 Jun 2015 05:06:51 -0500
+
+r-base (3.2.0.20150613-1) unstable; urgency=low
+
+ * Initial rc build (r68509) of R 3.2.1 expected for June 18
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 13 Jun 2015 12:31:20 -0500
+
+r-base (3.2.0-4) unstable; urgency=low
+
+ * debian/rules: Set JAVA_HOME explicitly as suggested in a patch kindly
+ supplied by Emmanuel Bourg (Closes: #745098)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 24 May 2015 08:17:33 -0500
+
+r-base (3.2.0-3vivid2) vivid; urgency=low
+
+ * PPA build for Ubuntu 14.10 ("vivid")
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 12 May 2015 17:11:11 -0500
+
+r-base (3.2.0-3vivid1) utopic; urgency=low
+
+ * PPA build for Ubuntu 14.10 ("vivid")
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 11 May 2015 06:51:17 -0500
+
+r-base (3.2.0-3) unstable; urgency=low
+
+ * debian/control: The r-base-core package now 'Provides: r-api-3' which
+ can be used to have r-cran-* depend on a particular API vintage.
+ (Closes: #704805)
+
+ * debiab/r-cran.mk: Have the build-time API vintage encoded as a Depends
+ (with thanks to Julian Gilbey, Charles Plessy, and others for the patch)
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 11 May 2015 06:08:12 -0500
+
+r-base (3.2.0-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Apply (modified) patch by Philipp Rinn to set
+ built-time (if unset) based on timestamp in debian/changelog
+ (Closes: #782764)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 21 Apr 2015 20:38:57 -0500
+
+r-base (3.2.0-1utopic1) utopic; urgency=low
+
+ * PPA build for Ubuntu 14.10 ("utopic")
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 09 Apr 2015 06:41:55 -0500
+
+r-base (3.2.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 16 Apr 2015 06:04:48 -0500
+
+r-base (3.1.3.20150413-1) unstable; urgency=low
+
+ * Third rc build (r68170) of R 3.2.0 expected for April 16
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 12 Apr 2015 21:38:03 -0500
+
+r-base (3.1.3.20150410-1) unstable; urgency=low
+
+ * Second rc build (r68169) of R 3.2.0 expected for April 16
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 09 Apr 2015 19:00:20 -0500
+
+r-base (3.1.3.20150409-1) unstable; urgency=low
+
+ * Initial rc build (r68161) of R 3.2.0 expected for April 16
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 08 Apr 2015 22:38:30 -0500
+
+r-base (3.1.3-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/reproducibility-patch/*.patch: Added two patches submitted to R
+ upstream and already integrated into upcoming R 3.2.0 releases; these
+ help setting a timestamp for the DESCRIPTION file of a) base R package
+ via a new env var PKG_BUILT_TIME passed down from debian/rules, and
+ also b) r-cran-* package built via r-cran.mk through a new option to
+ R CMD INSTALL
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 09 Mar 2015 06:32:25 -0500
+
+r-base (3.1.2.20150306-1) unstable; urgency=low
+
+ * Second rc build (r67947) of R 3.1.3 expected for March 9
+
+ * debian/reproducibility-patch/*.patch: Added two patches submitted to R
+ upstream and already integrated into upcoming R 3.2.0 releases; these
+ help setting a timestamp for the DESCRIPTION file of a) base R package
+ via a new env var PKG_BUILT_TIME passed down from debian/rules, and
+ also b) r-cran-* package built via r-cran.mk through a new option to
+ R CMD INSTALL
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 07 Mar 2015 09:51:04 -0600
+
+r-base (3.1.2.20150304-1) experimental; urgency=low
+
+ * Initial rc build (r67940) of R 3.1.3 expected for March 9
+
+ * debian/reproducibility-patch/*.patch: Added two patches submitted to R
+ upstream and already integrated into upcoming R 3.2.0 releases; these
+ help setting a timestamp for the DESCRIPTION file of a) base R package
+ via a new env var PKG_BUILT_TIME passed down from debian/rules, and
+ also b) r-cran-* package built via r-cran.mk through a new option to
+ R CMD INSTALL
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 04 Mar 2015 20:01:18 -0600
+
+r-base (3.1.2-3) experimental; urgency=low
+
+ * debian/reproducibility-patch/*.patch: Added two patches submitted to R
+ upstream and already integrated into upcoming R 3.2.0 releases; these
+ help setting a timestamp for the DESCRIPTION file of a) base R package
+ via a new env var PKG_BUILT_TIME passed down from debian/rules, and
+ also b) r-cran-* package built via r-cran.mk through a new option to
+ R CMD INSTALL (Closes: #774031)
+
+ * debian/rules: Added support for PKG_BUILT_TIME, but left commented-out
+
+ * debian/r-cran.mk: Added support for --built-timestampe, also inactive
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 12 Jan 2015 21:03:42 -0600
+
+r-base (3.1.2-2) unstable; urgency=low
+
+ * debian/control: Upgrade Build-Depends: to tcl and tk 8.6
+ (Closes: #768868)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 09 Nov 2014 14:05:44 -0600
+
+r-base (3.1.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 31 Oct 2014 05:04:22 -0500
+
+r-base (3.1.1.20141024-1) unstable; urgency=low
+
+ * Initial rc build (r66864) of R 3.1.2 expected for October 31
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 25 Oct 2014 14:16:00 -0500
+
+r-base (3.1.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 10 Jul 2014 05:04:12 -0500
+
+r-base (3.1.0.20140705-1) unstable; urgency=low
+
+ * Initial rc build (r66073) of R 3.1.1 expected for July 10
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 05 Jul 2014 10:48:31 -0500
+
+r-base (3.1.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 10 Apr 2014 06:04:45 -0500
+
+r-base (3.0.3.20140408-1) unstable; urgency=low
+
+ * Third rc build (r65383) of R 3.1.0 expected for April 10
+
+ * debian/rules: Also reflect 'dpkg-buildflags --get cppflags'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 08 Apr 2014 14:56:36 -0500
+
+r-base (3.0.3.20140405-1) unstable; urgency=low
+
+ * Second rc build (r65382) of R 3.1.0 expected for April 10
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 06 Apr 2014 14:09:44 -0500
+
+r-base (3.0.3.20140403-1) unstable; urgency=low
+
+ * Initial rc build (r65367) of R 3.1.0 expected for April 10
+
+ * debian/rules: Also export ldflags variable
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 03 Apr 2014 18:48:57 -0500
+
+r-base (3.0.3.20140331-1) unstable; urgency=low
+
+ * Second beta build (r65345) of R 3.1.0 expected for April 10
+
+ * debian/control: Added liblzma-dev to Depends: of r-base-dev
+ (Closes: #743076)
+
+ * debian/rules: Set optimflags, fcflags and ldflags via calls to
+ dpkg-buildflags with thanks to Julian Gilbey for the suggestion and
+ discussion (Closes: #726913)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 31 Mar 2014 19:58:17 -0500
+
+r-base (3.0.3.20140328-1) unstable; urgency=low
+
+ * Initial beta build (r65330) of R 3.1.0 expected for April 10
+
+ * debian/R.bash_completion: New version from Deepayan's repository
+ * debian/rules: Updated installation command for bash completion
+ * debian/control: Added bash-completion to Build-Depends:
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 28 Mar 2014 20:05:20 -0500
+
+r-base (3.0.3-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 06 Mar 2014 06:16:18 -0600
+
+r-base (3.0.2.20140301-1) unstable; urgency=low
+
+ * Second rc build (r65090) of R 3.0.3 expected for March 6
+
+ * debian/control: Re-enable Java on mips, mipsel as OpenJDK 7 is now
+ available for both. Thanks to Niels Thykier for the follow-up.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 01 Mar 2014 11:18:10 -0600
+
+r-base (3.0.2.20140226-1) unstable; urgency=low
+
+ * Initial rc build (r65081) of R 3.0.3 expected for March 6
+
+ * debian/arm-perl-regexp.patch: Patch no longer needed as the change has
+ now been applied upstream
+
+ * debian/control: Remove Build-Depends: on texi2html which has been
+ deprecated as a standalone package. (Closes: #726947)
+ * debian/control: Also remove Suggests: on texi2html for r-base-dev
+
+ * debian/control: Added "!mipsel" to the Build-Depends as OpenJDK 7 is
+ not available here (cf emails with Niels Thykier in #727805)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 26 Feb 2014 19:59:05 -0600
+
+r-base (3.0.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 25 Sep 2013 05:55:00 -0500
+
+r-base (3.0.1.20130919-1) unstable; urgency=low
+
+ * Initial rc build (r63954) of R 3.0.2 expected for September 25
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 19 Sep 2013 21:53:29 -0500
+
+r-base (3.0.1.20130915-1) unstable; urgency=low
+
+ * Initial build (r63932) of R 3.0.2 expected for September 25
+
+ * Version number scheme reverted to maj.min.pat.date rather than
+ maj.min.pat~date as the latex runs of the manuals once again break
+ when a tilde is present in the filename -- texi2dvi regression?
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 15 Sep 2013 08:07:40 -0500
+
+r-base (3.0.1-6) unstable; urgency=low
+
+ * debian/r-cran.mk: Undo brown paper bag error and add pipe symbol
+
+ * debian/rules: Do not run checks on kFreeBSD as it timed out
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 29 Jul 2013 19:35:24 -0500
+
+r-base (3.0.1-5) unstable; urgency=low
+
+ * debian/rules: Make a minor debian/rules clean more robust by using
+ 'rm -f' instead of plain 'rm'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 26 Jul 2013 09:12:06 -0500
+
+r-base (3.0.1-4) unstable; urgency=low
+
+ * debian/rules: Set optimisation to -O2 on kFreeBSD (Closes: #714506)
+
+ * debian/r-cran.mk: Minor tweak to regexp in 'make clean' step
+
+ * debian/watch: Adjusted path to look in R-3/ directory
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 26 Jul 2013 06:24:24 -0500
+
+r-base (3.0.1-3) unstable; urgency=low
+
+ * debian/rules: Tweak the pdf creation to overcome error from missing
+ r-recommend packages sources which should be ignored, but is not
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 25 May 2013 12:41:01 -0500
+
+r-base (3.0.1-2) unstable; urgency=low
+
+ * doc/manual: Apply changes from upstream (SVN revs 62773 + 62778) to
+ permit compilation of the manuals under both texinfo 4 and texinfo 5
+
+ * debian/rules: No longer temporarily disabled moving info files now
+ that they build correctly with texinfo 5 as well.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 23 May 2013 21:36:21 -0500
+
+r-base (3.0.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ * debian/rules: Temporarily disabled moving info files. Not all help
+ files will be built as a result. We are looking into this.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 16 May 2013 06:05:31 -0500
+
+r-base (3.0.1~20130512-1) unstable; urgency=low
+
+ * Initial rc build (r62731) of R 3.0.1 expected for May 16
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ * debian/rules: Temporarily disabled moving info files
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 12 May 2013 14:47:49 -0500
+
+r-base (3.0.0-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Revert recent patch to convert '.' in package names
+ to '-' as it breaks existing packages (Closes: #704606)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 03 Apr 2013 10:26:43 -0500
+
+r-base (3.0.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 03 Apr 2013 05:19:08 -0500
+
+r-base (3.0.0~20130330-1) unstable; urgency=low
+
+ * Second rc build (r62448) of R 3.0.0 expected for April 3
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 30 Mar 2013 23:34:53 -0500
+
+r-base (3.0.0~20130327-1) unstable; urgency=low
+
+ * Initial rc build (r62427) of R 3.0.0 expected for April 3
+
+ * debian/rules: Explicitly call 'make javaconf;
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 27 Mar 2013 20:02:31 -0500
+
+r-base (3.0.0~20130324-1) unstable; urgency=low
+
+ * Initial beta build (r62384) of R 3.0.0 expected for April 3
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 24 Mar 2013 08:54:05 -0500
+
+r-base (2.15.3-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Applied patch by m.eik michalke to also convert '.'
+ in package names to '-'
+
+ * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp from 2.15.2
+ with big thanks to Luka Luca Falavigna (Closes: #702427)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 10 Mar 2013 10:04:12 -0500
+
+r-base (2.15.3-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 01 Mar 2013 06:23:30 -0600
+
+r-base (2.15.3~20130327-1) unstable; urgency=low
+
+ * Third rc build (rev62077) of R 2.15.3 expected March 1
+
+ * debian/r-base-core.postinst: Fix typo in /etc/R/Renviron mode correction
+ creation (thanks again, Don Armstrong!) (Closes: #701774)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 27 Feb 2013 15:09:55 -0600
+
+r-base (2.15.3~20130326-1) unstable; urgency=low
+
+ * Second rc build (rev62062) of R 2.15.3 expected March 1
+
+ * debian/r-base-core.postinst: Ensure /etc/R/Renviron is created with
+ proper 0644 modes (thanks, Don Armstrong!) (Closes: #701774)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 26 Feb 2013 16:56:17 -0600
+
+r-base (2.15.3~20130324-1) unstable; urgency=low
+
+ * Initial rc build (rev62054) of R 2.15.3 expected March 1
+
+ * debian/rules: No longer patch the R script javareconf
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 24 Feb 2013 17:55:56 -0600
+
+r-base (2.15.2-2) unstable; urgency=low
+
+ * debian/control: Switch Build-Depends: from libtiff4-dev to libtiff5-dev
+
+ * debian/control: Set Standards-Version: to current version
+
+ * debian/rules: Generate md5sums for all files (Closes: #700381)
+ * debian/r-base-core.postinst: Modied ucf file treatment to avoid
+ triggering md5sum changes (with thanks to Andreas Beckman)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 23 Feb 2013 11:11:51 -0600
+
+r-base (2.15.2-1) unstable; urgency=low
+
+ * New upstream release
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ function when defining SHLIB_* macros to work-around an erroneus
+ string replacement which causes build failures on arm* architectures
+ but make the change conditonal on actually being on arm*.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 26 Oct 2012 06:17:58 -0500
+
+r-base (2.15.1-5) unstable; urgency=low
+
+ * debian/control: Switch Build-Depends: from openjdk-6-jdk to default-jdk
+ (Closes: #684285)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 08 Aug 2012 17:59:25 -0500
+
+r-base (2.15.1-4) unstable; urgency=low
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ really passing it to sub and not to grep (Closes: #679180)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 15 Jul 2012 17:56:35 -0500
+
+r-base (2.15.1-3) unstable; urgency=low
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ and correcting error in logic of patch used in -2. (Closes: #679180)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 15 Jul 2012 16:17:25 -0500
+
+r-base (2.15.1-2) unstable; urgency=low
+
+ * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
+ function when defining SHLIB_* macros to work-around an erroneus
+ string replacement which causes build failures on arm* architectures
+ but make the change conditonal on actually being on arm*.
+ With big thanks to Luca Falavigna for finding this fix. (Closes: #679180)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 14 Jul 2012 09:44:24 -0500
+
+r-base (2.15.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * src/X11/*: Applied revised patch by Philip Johnson to to set the X11
+ icon and window class for improved desktop experience; patch source
+ and support files are in debian/icon-class-patch/.
+ * debian/rules: Install icon png file and desktop file from Philip too
+ * debian/r-base-core.dirs: Add two directories for icon and desktop
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 22 Jun 2012 06:04:05 -0500
+
+r-base (2.15.1~20120617-1) unstable; urgency=low
+
+ * Initial rc build (rev59569) of R 2.15.1 expected June 22
+
+ * debian/control: Removed dpatch from Depends: for r-base-dev [lintian]
+
+ * src/X11/*: Applied patch posted by Philip Johnson to r-devel on June 7
+ to set the X11 icon and window class for improved desktop experience
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 17 Jun 2012 09:10:43 -0500
+
+r-base (2.15.0-2) unstable; urgency=low
+
+ * debian/rules: Test for gcc version 4.7.* and if found, reduce
+ optimisation to -O2 as gcc-4.7 fails to build R with -O3
+ (as per email discussions with Kurt Hornik of the R Core team)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 22 Apr 2012 09:46:28 -0500
+
+r-base (2.15.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 30 Mar 2012 07:42:33 -0500
+
+r-base (2.15.0~20120323-1) unstable; urgency=low
+
+ * Initial rc build (58802) of R 2.15.0 expected for March 30
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 23 Mar 2012 07:48:55 -0500
+
+r-base (2.15.0~20120317-1) unstable; urgency=low
+
+ * Initial beta build (r58769) of R 2.15.0 expected for March 30
+
+ * debian/R.bash_completion: New version from SVN (thanks, Deepayan!)
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 17 Mar 2012 13:27:32 -0500
+
+r-base (2.14.2-3) unstable; urgency=low
+
+ * debian/control: Really change Build-Depends: to libpng-dev this time
+ * debian/control: Also update Depends: for (virtual) r-base-dev
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 07 Mar 2012 14:52:20 -0600
+
+r-base (2.14.2-2) unstable; urgency=low
+
+ * debian/control: Change Build-Depends: to libpng-dev (Closes: #662488)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 07 Mar 2012 14:27:40 -0600
+
+r-base (2.14.2-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 29 Feb 2012 06:52:40 -0600
+
+r-base (2.14.2~20120222-1) unstable; urgency=low
+
+ * Initial rc build (r58449) of R 2.14.2 expected for Feb 29
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/r-cran.mk: Include simple-patchsys.mk only if quilt not used
+ as requested by Andreas Tille (Closes: #652456)
+
+ * debian/r-cran.mk: Support "R:Depends" expansion in debian/substvars
+ as requested by Andreas Tille and Charles Plessy (Closes: #659163)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 22 Feb 2012 08:51:46 -0600
+
+r-base (2.14.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 22 Dec 2011 06:32:24 -0600
+
+r-base (2.14.1~20111215-1) unstable; urgency=low
+
+ * Initial rc build (r57901) of R 2.14.1 expected for Dec 22
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Added the battery of texlive-* packages in
+ Build-Depends: to 'Suggests:' for r-base-dev so that users can build
+ all related documentation too
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 15 Dec 2011 21:57:29 -0600
+
+r-base (2.14.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 31 Oct 2011 05:00:31 -0500
+
+r-base (2.14.0~20111027-1) unstable; urgency=low
+
+ * Initial rc build (r57443) of R 2.14.0 expected for Oct 31
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 27 Oct 2011 12:59:54 -0500
+
+r-base (2.14.0~20111021-1) unstable; urgency=low
+
+ * Initial beta build (r57355) of R 2.14.0 expected for Oct 31
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 21 Oct 2011 14:56:51 -0500
+
+r-base (2.14.0~20111015-1) unstable; urgency=low
+
+ * Initial alpha release (r57258) of R 2.14.0 expected for Oct 31
+
+ * debian/rules: Setting '-std=gnu99' as part of CC, not CFLAGS (with
+ thanks to Kurt Hornik for the suggestion)
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 16 Oct 2011 00:39:15 -0500
+
+r-base (2.13.2-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ * debian/control: Added 'texlive-fonts-extra' to Build-Depends which R
+ 2.14.0 will need for the inconsolate font used in vignettes.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 30 Sep 2011 07:02:04 -0500
+
+r-base (2.13.2~20110922-1) unstable; urgency=low
+
+ [ Dirk Eddelbuettel ]
+ * First rc build (r57046) of R 2.13.2 expected for Sep 30
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+ * Applied patch by Jonathan Nieder re 'make check' (Closes: #638265)
+
+ [ Jonathan Nieder ]
+ * debian/rules: Run tests in build target, not the install target (since
+ they do not require root privileges).
+ * debian/rules: Do not run tests when DEB_BUILD_OPTIONS contains
+ "nocheck".
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 23 Sep 2011 07:23:10 -0500
+
+r-base (2.13.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 08 Jul 2011 06:17:17 -0500
+
+r-base (2.13.0-4) unstable; urgency=low
+
+ * debian/r-cran.mk: Make call to xvfb-run more robust by adding '-a'
+ option to allow automatic switching to free virtual server; with thanks
+ to Salvatore Bonaccorso for the suggestions (Closes: #630869)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 22 Jun 2011 08:59:55 -0500
+
+r-base (2.13.0-3) unstable; urgency=low
+
+ * debian/control: Switch Build-Depends: (and Depends: for r-base-dev)
+ from libjpeg62-dev to libjpeg-dev for libjpeg8 transition -- with
+ thanks to Bill Allombert for the heads-up (Closes: #629978)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 09 Jun 2011 17:43:27 -0500
+
+r-base (2.13.0-2) unstable; urgency=low
+
+ * debian/control: Add 'Depends: cdbs' to r-base-dev so that the r-cran-*
+ packages do not need to depend on it individually; it is a feature
+ of the r-cran.mk script sourced from r-base-dev (Closes: #627831)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 24 May 2011 19:28:19 -0500
+
+r-base (2.13.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 13 Apr 2011 06:24:26 -0500
+
+r-base (2.13.0~20110407-1) unstable; urgency=low
+
+ * First rc build (r55373) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 08 Apr 2011 12:10:17 -0500
+
+r-base (2.13.0~20110401-1) unstable; urgency=low
+
+ * First beta build (r55246) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 02 Apr 2011 07:38:54 -0500
+
+r-base (2.13.0~20110324-1) unstable; urgency=low
+
+ * Second alpha build (r55004) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 25 Mar 2011 07:15:21 -0500
+
+r-base (2.13.0~20110316-1) unstable; urgency=low
+
+ * Initial alpha release (r54827) of R 2.13.0 expected for Apr 13
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 17 Mar 2011 08:05:43 -0500
+
+r-base (2.12.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 25 Feb 2011 07:16:46 -0600
+
+r-base (2.12.2~20110218-1) unstable; urgency=low
+
+ * First rc built (r54487) of R 2.12.2 expected for Feb 25
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 19 Feb 2011 10:50:12 -0600
+
+r-base (2.12.2~20110215-1) unstable; urgency=low
+
+ * First beta built (r54439) of R 2.12.2 expected for Feb 25
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 15 Feb 2011 17:45:22 -0600
+
+r-base (2.12.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 16 Dec 2010 06:15:09 -0600
+
+r-base (2.12.1~20101208-1) unstable; urgency=low
+
+ * First rc built (r53817) of R 2.12.1 expected for Dec 16
+
+ * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
+ 1.0.5 version pass as lintian does not like the embedded library
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 09 Dec 2010 06:44:18 -0600
+
+r-base (2.12.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * As a new major release, this will go to unstable despite the freeze
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 15 Oct 2010 05:11:09 -0500
+
+r-base (2.12.0~20101007-1) experimental; urgency=low
+
+ * First rc built (r53048) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 07 Oct 2010 20:44:50 -0500
+
+r-base (2.11.1-7) unstable; urgency=low
+
+ * debian/control: Add 'liblzma-dev' to Build-Depends (Closes: #599120)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 04 Oct 2010 16:12:19 -0500
+
+r-base (2.12.0~20101002-1) experimental; urgency=low
+
+ * First beta built (r53048) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 02 Oct 2010 14:27:42 -0500
+
+r-base (2.12.0~20100928-1) experimental; urgency=low
+
+ * Third alpha built (r53048) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ * debian/control: Added liblzma-dev to Build-Depends
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 28 Sep 2010 14:59:37 -0500
+
+r-base (2.12.0~20100924-1) experimental; urgency=low
+
+ * Second alpha built (r52983) of R 2.12.0 expected for Oct 15
+
+ * Distribution still set to 'experimental' as release freeze is ongoing
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 24 Sep 2010 09:28:16 -0500
+
+r-base (2.12.0~20100917-1) experimental; urgency=low
+
+ * Initial alpha release (r52529) of R 2.12.0 expected for Oct 15
+
+ * Distribution set to 'experimental' as release freeze is ongoing
+
+ * R/m4, configure: Check zlib version for 1.2.3.4, not 1.2.3
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 17 Sep 2010 06:52:33 -0500
+
+r-base (2.11.1-6) unstable; urgency=low
+
+ * debian/control: Add [!mips] to the list architectures that do not have
+ a Build-Depends: on openjdk-6-jdk (per request of release team)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 15 Aug 2010 08:09:11 -0500
+
+r-base (2.11.1-5) unstable; urgency=low
+
+ * debian/rules: Also set ${cflags}, ${cxxflags}, ${fcflags} during
+ configure in light of #590126
+ * debian/rules: Set FCFLAGS as well as FFLAGS
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 06 Aug 2010 07:10:57 -0500
+
+r-base (2.11.1-4) unstable; urgency=low
+
+ * debian/rules: Impose '-g0' for mips and mipsel in light of #590126
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 05 Aug 2010 13:06:00 -0500
+
+r-base (2.11.1-3) unstable; urgency=low
+
+ * m4/R.m4: Apply patch Arnaud Patard to suppress -g flag during
+ configure which currently upsets tcl/tk on the mips and mipsel
+ platform (see the release-critical bug report #590126).
+ A big thanks to Arnaud for the patch and detailed analysis.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 01 Aug 2010 13:50:21 -0500
+
+r-base (2.11.1-2) unstable; urgency=low
+
+ * debian/rules: Re-apply arm fixes from 2.11.0-2 below which
+ inadvertently slipped. Thanks once again to Modestas for
+ spotting this. (Closes: #581237)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 03 Jun 2010 17:19:17 -0500
+
+r-base (2.11.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 31 May 2010 06:52:52 -0500
+
+r-base (2.11.1~20100525-1) unstable; urgency=low
+
+ * Release Candidate (r52102) of R 2.11.1 expected for May 31
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 26 May 2010 06:48:15 -0500
+
+r-base (2.11.0-2) unstable; urgency=low
+
+ * debian/rules: Withdraw old hack to let armel build without system blas
+ and lapack as these now work. With special thanks to Modestas Vainius
+ for spotting this and testing the fix. (Closes: #581237)
+
+ * debian/rules: Also withdraw setting of radical -O0 -g0 on armel
+ which was once needed due to poor Fortran compiler performance.
+ Once again thanks to Modestas Vainius for spotting and checking!
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 12 May 2010 21:25:38 -0500
+
+r-base (2.11.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 22 Apr 2010 06:29:47 -0500
+
+r-base (2.11.0~20100419-1) unstable; urgency=low
+
+ * Initial rc release (r51778) of R 2.11.0 expected for April 22
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 20 Apr 2010 10:04:38 -0500
+
+r-base (2.11.0~20100409-1) unstable; urgency=low
+
+ * Initial beta release (r51661) of R 2.11.0 expected for April 22
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 10 Apr 2010 14:35:56 -0500
+
+r-base (2.11.0~20100402-1) unstable; urgency=low
+
+ * Initial alpha release (r51564) of R 2.11.0 expected for April 22
+
+ * debian/control: Fix typo / editing mistake in Description for r-base
+ (Closes: #563234)
+
+ * debian/rules: Add softlink from /usr/lib/R/lib/libR.so into /usr/lib
+ to make the R library visible as /etc/ld.so.conf.d/ is no longer used
+ (Closes: #575913)
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 03 Apr 2010 08:44:29 -0500
+
+r-base (2.10.1-2) unstable; urgency=low
+
+ * configure: Apply patch by Nobuhiro Iwamatsu to allow for builds
+ on the sh4 architecture (Closes: #561180)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 14 Dec 2009 21:30:07 -0600
+
+r-base (2.10.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/control: For r-recommended, replace r-cran-vr with the four
+ unbundled packages r-cran-{mass,class,nnet,spatial}
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 14 Dec 2009 06:14:03 -0600
+
+r-base (2.10.1~20091210-1) unstable; urgency=low
+
+ * New upstream release candidate for R 2.10.1 expected for December 14
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 10 Dec 2009 13:42:48 -0600
+
+r-base (2.10.1~20091206-1) unstable; urgency=low
+
+ * New upstream beta release for R 2.10.1 expected for December 14
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 06 Dec 2009 15:27:49 -0600
+
+r-base (2.10.0-2) unstable; urgency=low
+
+ * debian/control: Replace Build-Depends: on xpdf-reader with xdg-utils
+ with thanks to Moritz Muehlenhoff
+
+ * debian/r-base-core.postinst: Switch from texhash to mktexlsr with
+ thanks to Julian Gilbey (Closes: #555187)
+
+ * debian/control: Fix grammar error by switching to 'This package provides'
+ in five of the package entries (which still does not quite call for this
+ somewhat inflationary use of automated bug filing seen here ...)
+ (Closes: #557842 #557843 #557844 #557845 #557846 #557847 #55849)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 28 Nov 2009 03:37:58 -0600
+
+r-base (2.10.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 26 Oct 2009 07:31:30 -0500
+
+r-base (2.10.0~20091019-1) unstable; urgency=low
+
+ * First release candidate of R 2.10.0 expected for October 26
+
+ * debian/rules: Configure with R_BROWSER=xdg-open as default HTML browser
+
+ * debian/control: As html documentation is now dynamically generated, the
+ r-doc-html package is no longer six mb in size and can be promoted from
+ Suggested: to Recommended: (thanks to Michael Rutter for the suggestion).
+
+ * debian/control: Add Conflicts/Provides/Replaces for r-base-core
+ on r-base-latex to uninstall existing (and now redundant) packages.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 19 Oct 2009 10:15:03 -0500
+
+r-base (2.10.0~20091013-1) unstable; urgency=low
+
+ * First beta release of R 2.10.0 expected for October 26
+
+ * debian/rules: No longer call 'make html' or 'make help' as starting
+ with R 2.10.0, documentation is now rendered on-demand by the R engine
+ * debian/rules: No longer fix modes on help-{links,print}.sh as these
+ script are no longer shipped
+
+ * debian/control: Removed entry for package r-base-latex
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 13 Oct 2009 12:41:48 -0500
+
+r-base (2.9.2-4) unstable; urgency=low
+
+ * configure: Re-insert xdg-open into list of pdf viewers tested
+ for at build time -- thanks to Sebastian P. Luque for the heads-up!
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 06 Oct 2009 17:21:20 -0500
+
+r-base (2.9.2-3) unstable; urgency=low
+
+ * debian/control: Also change Depends: in r-base-dev from
+ from 'libreadline5-dev' to 'libreadline-dev'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 16 Sep 2009 20:56:57 -0500
+
+r-base (2.9.2-2) unstable; urgency=low
+
+ * debian/control: As requested by Matthias Klose, change
+ Build-Depends: from 'libreadline5-dev' to 'libreadline-dev'
+
+ * debian/rules: Soft link from /usr/lib/R/COPYING against GPL-2
+ instead of GPL, with thanks to Isaac for spotting this.
+
+ * debian/control: Set Standards-Version: to current version
+
+ * debian/control: Add Depends: for r-doc-info on
+ 'dpkg (>= 1.15.4) | install-info'
+
+ * debian/rules: No longer install /etc/ld.so.conf.d/libR.conf
+
+ * debian/r-base-core.postinst: Call paperconf without prepended path
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 13 Sep 2009 20:27:45 -0500
+
+r-base (2.9.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * r-doc-{info,html}.{postinst,prerm}: Omit calls to install-docs
+ and install-info which is now handled by dpkg triggers.
+ * debian/control: Builds-Depends: on debhelper (>= 7.2.3)
+
+ * debian/control: Add 'xdg-utils' to Depends: for r-base-core
+
+ * debian/r-cran.mk: Improved find command in clean target
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 24 Aug 2009 06:15:24 -0500
+
+r-base (2.9.1-2) unstable; urgency=low
+
+ * Re-activated Java support using an updated ca-certificates-java
+ package by Matthias Klose -- Thanks!
+ * debian/control: Build-Depends: on openjdk-6-jdk added back in
+
+ * debian/control: Update Standards-Version: to current value.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 29 Jun 2009 19:20:13 -0500
+
+r-base (2.9.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * configure,m4/R.m4: Add xdg-open to set of pdf viewers checked by configure
+ (and this change has been committed upstream for 2.10.0 as well).
+
+ * As of this morning, the Debian Java toolchain is broken (#534520) so
+ support for Java is disabled by temporarily removing
+ openjdk-6-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386]
+ from Build-Depends: --- a new upload will be provided once this problem
+ is fixed.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 26 Jun 2009 09:34:58 -0500
+
+r-base (2.9.1~20090621-1) unstable; urgency=low
+
+ * First beta release of R 2.9.1 which should be released on June 26
+
+ * configure,m4/R.m4: Add xdg-open to set of pdf viewers checked by configure
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 21 Jun 2009 21:21:25 -0500
+
+r-base (2.9.1~20090618-1) unstable; urgency=low
+
+ * First beta release of R 2.9.1 which should be released on June 26
+
+ * debian/control: Switched (Build-)Depends: from xpdf-reader to xdg-utils;
+ pdf files will now be opened with xdg-open to reflect desktop choices.
+
+ * debian/README.Atlas: Further editing, added test script
+
+ * debian/r-cran.mk: Do not remove src/Makevars.in in clean step as this was
+ seen to upset some packages when used by cran2deb for all of CRAN
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 18 Jun 2009 07:00:11 -0500
+
+r-base (2.9.0-4) unstable; urgency=low
+
+ * debian/r-cran.mk: Applied suggestion by Julian Gilbey to correct
+ accidental lowercasing of CRAN package names which can prevent removal
+ ot extra license files (Closes: #531224)
+
+ * debian/README.Atlas: Updated to current packages (Closes: #531223)
+
+ * debian/r-cran.mk: Small correction to previously added 'clean' target
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 31 May 2009 21:15:27 -0500
+
+r-base (2.9.0-3) unstable; urgency=low
+
+ * debian/r-cran.mk: Applied patch by Steffen Moeller that adds a
+ 'clean' target which is useful if one builds outside of pbuilder.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 16 May 2009 18:07:02 -0500
+
+r-base (2.9.0-2) unstable; urgency=low
+
+ * debian/r-base-core.prerm: Remove /etc/R/Renviron on remove or purge to
+ not leave unowned files around. Also make sure ucf forgets all about it.
+ Special Thanks! to Holger Levsen. (Closes: #527618)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 10 May 2009 19:00:28 -0500
+
+r-base (2.9.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/rules: Turn optimisation back to -O3 on alpha (as elsewhere)
+ with thanks to Kurt Roeckx for applying a fix to gcc
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 17 Apr 2009 06:56:48 -0500
+
+r-base (2.9.0~20090410-1) unstable; urgency=low
+
+ * First release candidate of R 2.9.0 expected for April 17
+
+ * debian/rules: Lower optimisation to -O2 on alpha
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 11 Apr 2009 16:10:24 -0500
+
+r-base (2.9.0~20090403-1) unstable; urgency=low
+
+ * First beta release of R 2.9.0 expected for April 17
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 04 Apr 2009 10:52:59 -0500
+
+r-base (2.9.0~20090327-1) unstable; urgency=low
+
+ * Second alpha release of R 2.9.0 expected for April 17
+
+ * debian/control: Update Standards-Version: to current value.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 28 Mar 2009 13:53:36 -0500
+
+r-base (2.9.0~20090320-1) unstable; urgency=low
+
+ * Initial alpha release of R 2.9.0 expected for April 17
+
+ * debian/control: Changed Section: of r-base, r-base-core, and r-base-dev to
+ new section 'gnu-r'
+
+ * debian/control: Add r-cran-matrix to r-recommended as the upstream package
+ 'Matrix' is part of the core R release as of 2.9.0.
+
+ * debian/control: Change Depends: on 'ucf' to 'ucf (>= 3.0)' (Closes: #516508)
+
+ * debian/rules: No longer apply build-help.pl.patch, and no longer install
+ build-help.pl as the R help system was rewritten (mostly in R itself).
+
+ * debian/{control,compat}: Switch to debhelper compat level 7, and hence
+ set Build-Depends: on 'debhelper (>= 7.0.0)'
+
+ * debian/r-doc-html.{postinst,prerm}: Created manually as debhelper seemingly
+ stopped creating these from dh_installdocs
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 21 Mar 2009 13:06:30 -0500
+
+r-base (2.8.1-2) unstable; urgency=low
+
+ * debian/control: Add another Build-Depends: exclusion for the
+ 'kfreebsd-i386 kfreebsd-amd64 hurd-i386' architecture to openjdk-6-jdk.
+ Thanks to Petr Salinger for the heads-up. (Closes: 512324)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 19 Jan 2009 12:40:24 -0600
+
+r-base (2.8.1-1) unstable; urgency=low
+
+ * New upstream version released today
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 22 Dec 2008 20:10:19 -0600
+
+r-base (2.8.1~20081219-1) unstable; urgency=low
+
+ * Updated to Dec 19 release candidate of R 2.8.1 expected for Dec 22
+
+ * r-doc-pdf expected to be empty due to the tex/texinfo bug below
+
+ * debian/control: Change Build-Depends: on openjdk-6-jdk to
+ 'openjdk-6-jdk [!arm !hppa]' as arm and hppa do not have one.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 20 Dec 2008 09:26:38 -0600
+
+r-base (2.8.1~20081212) unstable; urgency=low
+
+ * Initial beta release of R 2.8.1 expected for Dec 22
+ * Fixes 'dev2bitmap fails with gsexe related error' (Closes: #505698)
+
+ * As #487974 is still open, the r-doc-pdf documentation package is again
+ almost empty due to the tilde in the Debian revision number which breaks
+ the texinfo-to-pdf conversions. Users are advised to hold onto the
+ 2.8.0 version of the package until 2.8.1 comes out in ten days.
+
+ * debian/control: Added 'openjdk-6-jdk' to Build-Depends:
+ * debian/r-cran.mk: Removed commented-out code that attempted to
+ configure Java at package build-time, we now do that at R builds
+
+ * debian/rules: Set softlinks for COPYING and COPYING.LIB to GPL-2 and
+ LGPL-2.1, respectively, to ensure the correct versions are linked.
+ Thanks to Deepayan Sarkar for the suggestion.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 12 Dec 2008 11:36:22 -0600
+
+r-base (2.8.0-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 20 Oct 2008 06:07:59 -0500
+
+r-base (2.8.0~20081013-1) unstable; urgency=low
+
+ * Initial 'Release Candidate' package of R 2.8.0 expected for October 20
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 13 Oct 2008 10:07:47 -0500
+
+r-base (2.8.0~20081006-1) unstable; urgency=low
+
+ * Initial 'Beta' package of R 2.8.0 expected to be released on October 20
+
+ * debian/control: Updated Description: text; with thanks to Doug Bates
+ and Martin Maechler for helpful suggestions and comments.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 05 Oct 2008 15:15:44 -0500
+
+r-base (2.7.2-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Switch from cdbs snippet dpatch.mk to simple-patchsys.mk
+
+ * debian/{Renviron.site,Rprofile.site}: Install simple stanza files with
+ example usage into /etc/R/ with softlinks from $R_HOME/etc as for the
+ other config files. Thanks to Christian Hudon for the suggestion.
+ (Closes: #498520)
+
+ * src/library/base/R/dcf.R: Correct regexp for Debian-style control field
+ writing as per the one-line patch by Charles Blundell to r-devel / r-bugs
+ which should help us in cran2deb as well
+
+ * debian/control: Switched Build-Depends from tcl/tk 8.4 to 8.5
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 13 Sep 2008 17:07:31 -0500
+
+r-base (2.7.2-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ * src/scripts/javareconf: Replace use of /tmp with result of
+ `mktemp -t -d` to avoid symlink attacks (Closes: #496418)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 25 Aug 2008 06:37:14 -0500
+
+r-base (2.7.2~20080816-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.7.2 expected to be released on August 25
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 17 Aug 2008 10:15:43 -0500
+
+r-base (2.7.1-2) unstable; urgency=low
+
+ * debian/r-doc-{info,html,pdf}: Added R-ints and R-admin manuals
+ * debian/r-doc-html.doc-base.ints: Added new doc-base file
+
+ * debian/rules: Exclude usr/lib/R/etc/Renviron.ucf from md5sums
+ (Closes: #491637)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 21 Jul 2008 06:42:27 -0500
+
+r-base (2.7.1-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 23 Jun 2008 06:10:26 -0500
+
+r-base (2.7.1~20080621-1) unstable; urgency=low
+
+ * New 'rc' release of R 2.7.1 expected to be released on June 23
+
+ * debian/{rules,r-base-core.postinst}: Changed to have /etc/R/Renviron
+ be handled by ucf, with thanks to Aaron M. Ucko (Closes: #476420)
+ * debian/control: Added Depends: on ucf to r-base-core
+
+ * debian/control: Build-Depends updated from 'x-dev, xbase-clients' to
+ 'x11proto-core-dev, xauth'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 21 Jun 2008 11:26:48 -0500
+
+r-base (2.7.1~20080614-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.7.1 expected to be released on June 23
+
+ * debian/control: Added Homepage: field as suggested by Andreas Tille
+ (Closes: #481058)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 14 Jun 2008 11:45:22 -0500
+
+r-base (2.7.0-1) unstable; urgency=low
+
+ * New upstream version released a few hours ago
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 22 Apr 2008 08:40:44 -0500
+
+r-base (2.7.0~20080416-1) unstable; urgency=low
+
+ * Second 'rc' release of R 2.7.0 expected to be released on April 22
+
+ * debian/rules: Explicit rebuild and copying of Rscript to prevent seepage
+ of a bad R_HOME setting from build-time (Closes: #475343)
+
+ * debian/control: Add new package 'r-base-core-dbg' with stripped debugging
+ symbols; thanks to Soeren for the suggestion (Closes: #476345)
+ * debian/rules: Modified dh_strip call accordingly
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 16 Apr 2008 13:01:21 -0500
+
+r-base (2.7.0~20080415-1) unstable; urgency=low
+
+ * Initial 'rc' release of R 2.7.0 expected to be released on April 22
+
+ * debian/r-doc.html.doc-base.*: Changed section to 'Science/Data Analysis'
+
+ * debian/control: Added 'xvfb, xbase-clients, xfonts-base' to Build-Depends:
+ * debian/rules: Change 'make check' into 'xvfb-run make check-all'
+
+ * debian/control: Replace 'tetex-bin, tetex-extra' in Build-Depends: with
+ 'texlive-base, texlive-latex-base, texlive-generic-recommended,
+ texlive-fonts-recommended, texlive-extra-utils, texlive-latex-recommended,
+ texlive-latex-extra, texinfo, texi2html'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 15 Apr 2008 14:32:08 -0500
+
+r-base (2.7.0~20080408-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.7.0 expected to be released on April 22
+
+ * debian/rules: Configure and build with Debian's lapack
+ * debian/control: Upgraded Build-Depends: to liblapack-dev (>= 3.1.1)
+
+ * debian/rules: Add new configure options --with-cairo and --with-pango
+ * debian/control: Added Build-Depends: on 'libpango1.0-dev, libcairo2-dev'
+ * debian/control: Revert Depends: for 'quasi-virtual' r-base-dev to
+ 'libblas-dev | libatlas-base-dev, liblapack-dev | libatlas-base-dev'
+ as the transition to gfortran-built lapack/blas/atlas is complete.
+ (Closes: #473695)
+
+ * debian/control: r-recommended no longer Depends: on r-cran-rcompgen as
+ per upstream having integrated the rcomgen packaged into r-base-core.
+ * debian/control: Added Conflicts/Provides/Replaces for r-base-core
+ on r-cran-rcompgen to uninstall existing (and now redundant) packages.
+
+ * debian/control: Added Build-Depends on 'libtiff4-dev'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 08 Apr 2008 21:24:42 -0500
+
+r-base (2.6.2-2) unstable; urgency=low
+
+ * debian/{rules,control}: Reverting the use of Debian's lapack as we got
+ a SVD-related bug report with a day -- thanks, Ben! (Closes: #464833)
+ - remove 'liblapack-dev' from Build-Depends
+ - call configure with
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 09 Feb 2008 10:05:24 -0600
+
+r-base (2.6.2-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/control: Added 'liblapack-dev' to Build-Depends: to switch back
+ to using Debian's Lapack rather than the version supplied by R.
+ * debian/rules: Dito, call configure with '--with-lapack'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 08 Feb 2008 09:40:02 -0600
+
+r-base (2.6.1-2) unstable; urgency=low
+
+ * debian/control: Replace Build-Depends: on 'refblas3-dev | atlas3-base-dev'
+ with 'libblas-dev' to use the new gfortran-built BLAS libraries. Thanks
+ to Riku Voipio for the heads-up and patch. (Closes: #461767)
+
+ * debian/control: Likewise set the Depends: for the quasi-virtual
+ r-base-dev on 'libblas-dev' to enfore use of the new BLAS.
+
+ * debian/control: Update Standards-Version: to current value.
+
+ * debian/{r-base-core,r-recommended}.lintian: Add a few silencers for
+ the 'package-contains-empty-directory' warnings.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 20 Jan 2008 20:24:52 -0600
+
+r-base (2.6.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/rules: As gcc-4.2 is now, unset suffix '-4.2' on gcc et al
+ * debian/control: Likewise, removed '-4.2' from gcc et al in Build-Depends
+ and Depends for r-base-dev and used versioned Depends (>= 4:4.1.0)
+ which are also suitable for backports and Ubuntu port -- and Debian
+ will get 4.2 anyway as it is the default in testing and unstable
+
+ * debian/rules: Define FC=gfortran as the Fortran95 compiler for packages
+
+ * debian/r-base-core.shlibs: Point libR.so and libRlapack.so to r-base-core
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 26 Nov 2007 11:20:57 -0600
+
+r-base (2.6.0-4) unstable; urgency=medium
+
+ * Urgency medium as a "Depends: tk8.4 (>= 8.4.16-2)" is needed to undo
+ the breakage introduced by the version in testing (tk8.4_8.4.16-1).
+ This build does not introduce any new code or configuration settings
+ and should migrate to testing as soon as possible.
+
+ * Rebuild R to obtain Depends on newer Tk (Closes: #451152)
+
+ * debian/shlibs.local: New file, added for Depends on newer tk8.4 which
+ is not (yet) provided via the package's shlibs file, also filed a
+ bugreport against tk8.4
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 13 Nov 2007 19:45:59 -0600
+
+r-base (2.6.0-3) unstable; urgency=low
+
+ * debian/r-cran.mk: Retiring the experimental javareconf support for now.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 10 Oct 2007 08:46:43 -0500
+
+r-base (2.6.0-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Set Java (re-)conf. call to "R CMD javareconf -e ''"
+ to not require write to Makeconf file (Closes: #445722)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 09 Oct 2007 14:20:12 -0500
+
+r-base (2.6.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 03 Oct 2007 10:25:43 -0500
+
+r-base (2.6.0~20070930-1) unstable; urgency=low
+
+ * Second 'rc' release of R 2.6.0 expected to be released on October 3
+
+ * debian/r-cran.mk:
+ - Apply patch by David Vernazobres to permit additional argument
+ - Add test for Java compiler and run R CMD javareconf if found
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 01 Oct 2007 16:38:49 -0500
+
+r-base (2.6.0~20070925-1) unstable; urgency=low
+
+ * Initial 'rc' release of R 2.6.0 expected to be released on October 3
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 26 Sep 2007 10:08:33 -0500
+
+r-base (2.6.0~20070918-1) unstable; urgency=low
+
+ * Initial 'beta' release of R 2.6.0 expected to be released on October 3
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 19 Sep 2007 09:50:17 -0500
+
+r-base (2.6.0~20070910-3) unstable; urgency=low
+
+ * debian/r-cran.mk: Fix another syntax error
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 12 Sep 2007 21:54:10 -0500
+
+r-base (2.6.0~20070910-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Add missing escape to if/else/fi statement for xvfb-run
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 12 Sep 2007 21:01:19 -0500
+
+r-base (2.6.0~20070910-1) unstable; urgency=low
+
+ * Initial 'alpha' release of R 2.6.0 expected to be released on October 3
+
+ * Debian changes:
+ - debian/control: Added 'cdbs, debhelper' as Suggests: for r-base-dev
+
+ - r-cran.mk: If the xvfb-run script is found, use it to wrap the call
+ to 'R CMD INSTALL ...' to provide (virtual) X11 for packages that may
+ need it, this even works in a pbuilder setting. If not found, just
+ proceed as usual with a straight-up 'R CMD INSTALL ...'. Packages
+ using this feature need Build-Depends on xvfb, xbase-clients (for
+ xauth) and xfonts-base (for basic fonts).
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 11 Sep 2007 16:24:33 -0500
+
+r-base (2.5.1-2) unstable; urgency=low
+
+ * debian/control: Add r-cran-codetools to Depends: for r-recommends
+
+ * debian/r-base-core.menu: Section now "Applications/Science/Data Analysis"
+
+ * debian/Renviron-R_LIBS.patch: With R 2.5.*, modify R_LIBS_SITE not R_LIBS
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 18 Jul 2007 14:26:06 -0500
+
+r-base (2.5.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 28 Jun 2007 09:45:43 -0500
+
+r-base (2.5.1~20070625-1) unstable; urgency=low
+
+ * Second release candidate for R 2.5.1 expected for June 28
+
+ * To ensure successful builds involving Fortran, we need to explicitly
+ select the gcc-4.2 versions of the the compiler suite in debian/rules,
+ and per Build-Depends in debian/control as well as the Depends for
+ r-base-dev. Backporters will probably need to revert this to 4.1.
+ Thanks to Michael Ablassmeier and Lucas Nussbaum for the heads-up.
+
+ * debian/control: Changed Build-Depends from 'gcc (>= 4:4.0),
+ gfortran (>= 4.0.2)' to 'gcc-4.2, g++-4.2, gfortran-4.2'
+ * debian/control: Changed Depends for r-base-dev from 'gfortran (>= 4.0.2),
+ gcc (>= 4:4.0), g++ (>= 4:4.0)' to 'gcc-4.2, g++-4.2, gfortran-4.2'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 26 Jun 2007 09:36:23 -0500
+
+r-base (2.5.1~20070622-1) unstable; urgency=low
+
+ * First release candidate for R 2.5.1 expected for June 28
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 23 Jun 2007 20:13:22 -0500
+
+r-base (2.5.1~20070618-1) unstable; urgency=low
+
+ * New beta release candidate for R 2.5.1 expected for June 28
+
+ * debian/control: Add 'dpatch' to Depends: for r-base-dev to ensure
+ that the r-cran.mk stanza can use dpatch (Closes: #429464)
+
+ * debian/control: Switch from $Source-Version to $source:Version and
+ $binary:Version (lintian)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 18 Jun 2007 08:09:11 -0500
+
+r-base (2.5.1~20070614-1) unstable; urgency=low
+
+ * First 'beta' of R 2.5.1 expected to be released on June 28
+
+ * debian/r-cran.mk: Add dpatch.mk to debian/rules stanza
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 14 Jun 2007 21:36:05 -0500
+
+r-base (2.5.1~20070530-1) unstable; urgency=low
+
+ * R-patched as of 2007-05-30
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 31 May 2007 16:05:30 -0500
+
+r-base (2.5.1~20070513-1) unstable; urgency=low
+
+ * R-patched as of 2007-05-13
+
+ * First release with new upstream support for DESTDIR
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 14 May 2007 08:57:08 -0500
+
+r-base (2.5.0-2) unstable; urgency=low
+
+ * src/nmath/standalone/Makefile.in,src/scripts/Makefile.in,
+ src/unix/Makefile.in: Applied patch by Martyn Plummer which
+ brings R closer to standard GNU behaviour with respect to
+ 'make install' redirection. In particular, this fixes the
+ new binary /usr/bin/Rscript which was broken in 2.5.0-1, also
+ corrects /usr/pkgconfig/libR.pc, adds the a new file
+ /usr/pkgconfig/libRmath.pc (for r-mathlib) and also corrects
+ /usr/bin/R which we used to patch post-'make install'.
+
+ * debian/control: Added Depends: for r-recommended on r-cran-rcompgen
+ as this package is now in Debian unstable.
+
+ * /etc/ld.so.conf.d/R.conf: Added new file so that libR.so and
+ libRlapack.so will be known to ld.so
+
+ * debian/rules: Call configure with --enable-memory-profiling
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 2 May 2007 21:17:47 -0500
+
+r-base (2.5.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 24 Apr 2007 06:09:00 -0500
+
+r-base (2.5.0~20070422-1) unstable; urgency=low
+
+ * First 'rc' package of R 2.5.0 expected to be released next week
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 23 Apr 2007 08:12:25 -0500
+
+r-base (2.5.0~20070412-1) unstable; urgency=low
+
+ * First 'beta release of R 2.5.0 expected to be released later this month
+
+ * debian/r-cran.mk: Added test for value of 'Priority: in DESCRIPTION which
+ is used for the choice of the install directory below $R_HOME
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 13 Apr 2007 14:14:41 -0500
+
+r-base (2.5.0~20070407-1) unstable; urgency=low
+
+ * First 'alpha' release of R 2.5.0 expected to be released later this month
+
+ * debian/rules: Configure R to use original zip and unzip instead
+ of the 'mini' variant as some packages want a -q option for unzip.
+ * debian/control: Switch Depends: from zlib-bin to 'zip, unzip'
+
+ * debian/r-cran.mk: Allow for optional $(debRreposname) to allow
+ automated switching from CRAN builds to BioC builds.
+ Thanks to Steffen Moeller for the patch.
+
+ * debian/r-cran.mk: Allow for options $(makeFlags) to be passed to
+ R CMD INSTALL -- for example the RQuantLib package makes use of this
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 8 Apr 2007 06:56:08 -0500
+
+r-base (2.4.1-2) unstable; urgency=low
+
+ * src/main.c: Applied patch provided by Samuel Thibault to allow builds
+ on hurd-i386 which (still) lacks SA_SIGINFO. Bug report also forwarded
+ upstream, and R 2.5.0 should have a fix too. (Closes: #407358)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 27 Jan 2007 13:12:13 -0600
+
+r-base (2.4.1-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * Debian package for 'unstable' as Debian 4.0 ('etch') is frozen
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 18 Dec 2006 08:53:09 -0600
+
+r-base (2.4.1~20061205-1) unstable; urgency=low
+
+ * First beta package of the upcoming R 2.4.1 scheduled for December 18
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 6 Dec 2006 22:51:18 -0600
+
+r-base (2.4.0.20061125-1) unstable; urgency=low
+
+ * New upstream version patch version dated 2006-11-03
+ -- a new R 2.4.1 release should arrive in just a few weeks
+ * debian/r-base-core.postinst: Rewrote paperconf handling one
+ more, with thanks to Marc Glisse for another good suggestion
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 26 Nov 2006 18:21:16 -0600
+
+r-base (2.4.0.20061103-1) unstable; urgency=low
+
+ * New upstream version patch version dated 2006-11-03
+ -- a new R 2.4.1 release may arrive in a few weeks
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 2 Nov 2006 21:50:13 -0600
+
+r-base (2.4.0.20061029-2) unstable; urgency=low
+
+ * debian/r-cran.mk: Another brown paperbag fix, this time for the logic
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 29 Oct 2006 17:36:36 -0600
+
+r-base (2.4.0.20061029-1) unstable; urgency=low
+
+ * New upstream version patch version taken from svn as of 2006-10-29
+ -- a new R 2.4.1 release may arrive in a few weeks
+
+ * debian/r-cran.mk: Brown paperbag fix replacing space with tabs
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 29 Oct 2006 11:35:16 -0600
+
+r-base (2.4.0.20061027-1) unstable; urgency=low
+
+ * New upstream version patch version dated 2006-10-27
+ -- a proper R 2.4.1 is not expected until December 2006
+
+ * debian/r-base-core.postinst: Rewrote paperconf handling (Closes: #394114)
+ * debian/R.bash_completion: use updated version from Deepayan Sarkar
+ * debian/r-cran.mk: If present, also install lintian overrides file
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 28 Oct 2006 20:11:10 -0500
+
+r-base (2.4.0-1) unstable; urgency=low
+
+ * New upstream version released this morning
+
+ * debian/rules: Link /usr/share/texmf/tex/latex/R to ../../../R/share/texmf,
+ instead of the older link into /usr/lib (Closes: #390751)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 3 Oct 2006 07:07:02 -0500
+
+r-base (2.4.0~rc20060926-1) unstable; urgency=low
+
+ * First release candidate of the upcoming R 2.4.0 planned for October 3
+
+ * debian/rules: Install ldpaths in /etc/R and link back to $R_HOME/etc
+ * debian/rules: Patch javareconf to use /etc/R instead of $R_HOME/etc
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 28 Sep 2006 20:15:03 -0500
+
+r-base (2.4.0~rc20060922-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.4.0 planned for October 3
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 23 Sep 2006 10:59:39 -0500
+
+r-base (2.4.0~rc20060919-1) unstable; urgency=low
+
+ * First alpha release of the upcoming R 2.4.0 planned for October 3
+
+ * debian/rules: Updated CFLAGS and FFLAGS to -O3, and set LDFLAGS
+ to -Wl,-O1 as suggested by upstream.
+ * debian/rules: Additional LDFLAGS options '-Bdirect,--hash-style=both'
+ will be added once binutils support them.
+
+ * debian/control: Use a '>=' instead of '=' in Depends: on r-base-core
+ for arch-independent package r-base, r-base-dev, r-recommend [lintian]
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 19 Sep 2006 14:51:47 -0500
+
+r-base (2.3.1-3) unstable; urgency=low
+
+ * debian/r-doc-html.preinst: Apply one-char fix suggested by
+ Don Armstrong (Closes: #382696)
+ * debian/control: Added forgotten Conflicts: r-gnome
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 29 Aug 2006 19:35:07 -0500
+
+r-base (2.3.1-2) unstable; urgency=low
+
+ * debian/control: Removed obsolete and deprecated r-gnome entry
+ * debian/control: Added Conflicts:, Replaces: and Provides: for
+ 'r-gnome (<= 2.3.1)' to r-base-core to finally replace r-gnome
+
+ * debian/r-doc-html.preinst: Added file with test for symlink
+ /usr/share/doc/r-doc-html/manual/ which may be left over from
+ a previous installation and needs to be removed for a clean
+ current installation (Closes: #376940)
+
+ * debian/rules: Correct softlink for /usr/share/doc/r-base-core/doc
+ into /usr/share/R/doc (Closes: #380126)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 28 Jul 2006 19:52:13 -0500
+
+r-base (2.3.1-1) unstable; urgency=low
+
+ * New upstream release released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 1 Jun 2006 06:14:26 -0500
+
+r-base (2.3.0.svn38197-1) unstable; urgency=low
+
+ * Second beta release of the upcoming R 2.3.1 scheduled for June 1
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 26 May 2006 06:09:03 -0500
+
+r-base (2.3.0.svn38119-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.3.1 scheduled for June 1
+
+ * debian/control: Standards-Version: increased to 3.7.2
+
+ * debian/r-cran.mk: Small improvements
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 19 May 2006 20:15:30 -0500
+
+r-base (2.3.0-1) unstable; urgency=low
+
+ * New upstream version 2.3.0 released this morning
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 24 Apr 2006 09:30:57 -0500
+
+r-base (2.2.1.svn37779-1) unstable; urgency=low
+
+ * Second beta release of the upcoming R 2.3.0 scheduled for April 24
+
+ * src/main/version.c: Upstream fix for 'R --version' (Closes: #361968)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 15 Apr 2006 16:30:20 -0500
+
+r-base (2.2.1.svn37715-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.3.0 scheduled for April 24
+
+ * debian/rules: On ppc64, add -mminimal-toc to compiler flags
+ Thanks to Andreas Jochens for the patch. (Closes: #361604)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 9 Apr 2006 07:40:48 -0500
+
+r-base (2.2.1.svn37668-1) unstable; urgency=low
+
+ * Second alpha release of the upcoming R 2.3.0 planned for April 24
+
+ * configure{,.ac}: Upstream fix also selecting -fPIC on s390* which is
+ less invasive than the rushed and uncoordinated binary NMU below. Please
+ consider talking to the Debian maintainer, or R Core, before making
+ undifferentiated wholesale changes to the build process. (Closes: #361219)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 8 Apr 2006 09:18:09 -0500
+
+r-base (2.2.1.svn37642-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Always build with -fPIC. (closes: #361219)
+
+ -- Bastian Blank <waldi@debian.org> Fri, 7 Apr 2006 08:59:15 +0000
+
+r-base (2.2.1.svn37642-1) unstable; urgency=low
+
+ * First alpha release of the upcoming R 2.3.0 planned for April 24
+
+ * debian/r-cran.mk: New file to be used as debian/rules for r-cran-*
+ * debian/rules: Accomodate installation of cran.mk into r-base-dev
+
+ * debian/control: Set gcc and gfortran Build-Depends: to version 4
+ * debian/control: Likewise for Depends: of r-base-dev
+
+ * debian/rules: Add -std=gnu99 to C compiler flags, and split and
+ slightly reorganize compiler flags and optimization options
+
+ * debian/{r-base-core,r-mathlib}.lintian: Added a few entries
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 4 Apr 2006 17:55:51 -0500
+
+r-base (2.2.1-6) unstable; urgency=medium
+
+ * debian/r-base-core.preinst: The symbolic link /usr/lib/R/share
+ introduced in -4 prevents the directory added in -5 to be created
+ so remove if found in the preinst.
+
+ * Urgency still set up to medium so that testing and unstable users get
+ the fix quickly.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 6 Feb 2006 12:00:21 -0600
+
+r-base (2.2.1-5) unstable; urgency=medium
+
+ * debian/build-help.pl: Empty stanza to just print warning when called.
+ * debian/rules: Install that quasi-empty file debian/build-help.pl as
+ /usr/lib/R/share/perl/build-help.pl so that the not-yet-updated
+ r-cran-* et al add-on packages for R do not fail now that the upstream
+ build-help.pl is install in /usr/share/R/share/perl/. The softlink
+ solution introduced in 2.2.1-4 fails for upgrades on testing where
+ /usr/lib/R/share/ already exists as a directory.
+
+ * Urgency set up to medium so that testing users get the fix quickly.
+ No other changes than creation of the two-liner build-help.pl
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 6 Feb 2006 09:23:14 -0600
+
+r-base (2.2.1-4) unstable; urgency=low
+
+ * debian/rules: Until the postinst and postrm calls in all r-cran-*
+ packages have been updated, add a transitional link so we can call
+ /usr/lib/R/share/perl/build-help.pl (Closes: #349637)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 24 Jan 2006 07:13:34 -0600
+
+r-base (2.2.1-3) unstable; urgency=low
+
+ * Re-wrote parts of debian/* to take advantage of recent upstream changes
+ permitting installation of (most) files outside of /usr/lib/R;
+ * debian/rules: Use configure options
+ --datadir=/usr/share/R/share and
+ --includedir=/usr/share/R/include
+ as well as 'make install' targets
+ rsharedir, rincludedir, and rdocdir
+ * debian/r-{base-html.{files,dirs}, doc-pdf.{files,links},
+ doc-html.{file,links}}:
+ updated accordingly to refer to /usr/share/R/* instead of /usr/lib/R
+ * For R itself (but not for packages), architecture-independent files
+ of r-base-core now install below /usr/share/R (Closes: #300765)
+
+ * debian/control: Added Build-Depends: for libx11-dev, libxt-dev, x-dev
+ (though the existing Build-Depends on tcl/tk effectively cover this).
+ Credits for the suggestion go to the xlibs-split-check script .
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 21 Jan 2006 18:14:37 -0600
+
+r-base (2.2.1-2) unstable; urgency=low
+
+ * debian/control: Remove Build-Depends: on libpaperg-dev as we do not
+ actually build against libpaper anyway (Closes: #346403)
+ * debian/control: Add Depends: on libpaper-utils to r-base-core,
+ and remove different Suggests: of libpaperg
+
+ * debian/control: Update Standards-Version: to 3.6.2
+ * debian/control: Change Architecture: any for empty r-recommended
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 7 Jan 2006 20:18:06 -0600
+
+r-base (2.2.1-1) unstable; urgency=low
+
+ * New upstream version 2.2.1 released this morning
+
+ * debian/control: Remove unnecessary f2c from Depends: in r-base-dev
+ * debian/rules: Set DH_COMPAT=4
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 20 Dec 2005 06:18:38 -0600
+
+r-base (2.2.0.rc.20051214-1) unstable; urgency=low
+
+ * Second beta release of the upcoming R 2.2.1 planned for December 20
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 15 Dec 2005 16:25:43 -0600
+
+r-base (2.2.0.rc.20051206-1) unstable; urgency=low
+
+ * First beta release of the upcoming R 2.2.1 planned for December 20
+
+ * debian/rules: Install bash completion file debian/R.bash_completion
+ by Deepayan Sarkar and announced to r-devel on 2005-11-30
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 7 Dec 2005 19:34:47 -0600
+
+r-base (2.2.0.final-4) unstable; urgency=low
+
+ * debian/rules: Really skip 'make check' on hppa (Closes: #333462)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 24 Oct 2005 18:59:16 -0500
+
+r-base (2.2.0.final-3) unstable; urgency=low
+
+ * debian/rules: Skip 'make check' on hppa (Closes: #333462)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 24 Oct 2005 08:53:22 -0500
+
+r-base (2.2.0.final-2) unstable; urgency=low
+
+ * Rebuilt with properly renamed .orig.tar.gz (Closes: #332586)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 7 Oct 2005 21:20:16 -0500
+
+r-base (2.2.0.final-1) unstable; urgency=low
+
+ * New upstream version 2.2.0 released today, following six
+ Debian pre-releases (and a repeat of a version number snafu made
+ years ago, hence the need for the '.final')
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 6 Oct 2005 21:18:53 -0500
+
+r-base (2.2.0.beta.20050929-1) unstable; urgency=low
+
+ * Second weekly beta release (using 2005-09-22 candidate) of R 2.2.0
+
+ * debian/rules: Call configure with LIBnn=lib to enforce use of
+ /usr/lib everywhere, including amd64 (Closes: #329952)
+
+ * share/perl/build-help.pl: Wrote patch to re-enable deprecated --htmllists
+ argument as a no-op so that our r-cran-* postinst files can call it.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 29 Sep 2005 21:45:12 -0500
+
+r-base (2.2.0.beta.20050922-2) unstable; urgency=low
+
+ * debian/rules: Create softlink from R's TeX files (used for doc.
+ and Sweave) into the texmf hierarchy. (Thanks, Gregor Gorjanc)
+ * debian/r-base-core.dirs: Add 'usr/share/texmf/tex/latex'
+ * debian/r-base-core.postinst: Call texhash if it exists
+
+ * Really re-apply the Perl fix (share/perl/{build-help.pl,R/Rdlists.pm)
+ to maintain compatibility with all the r-cran-* packages postinst
+ (Closes: #330085)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 25 Sep 2005 16:07:07 -0500
+
+r-base (2.2.0.beta.20050922-1) unstable; urgency=low
+
+ * First beta release candidate (dated 2005-09-22) of R 2.2.0
+
+ * Following prior practice, this release is designated for unstable
+ after the two first alpha releases in experiment.
+
+ * share/perl/build-help.pl, share/perl/R/Rdlists.pm: As in the previous
+ snapshot, fall back to R 2.1.1 code to support other r-cran-* packages
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 22 Sep 2005 21:10:12 -0500
+
+r-base (2.2.0.alpha.20050915-1) experimental; urgency=low
+
+ * Second alpha release of the upcoming R 2.2.0 planned for October 6
+
+ * share/perl/build-help.pl, share/perl/R/Rdlists.pm: As in the previous
+ snapshot, fall back to R 2.1.1 code to support other r-cran-* packages
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 15 Sep 2005 19:37:11 -0500
+
+r-base (2.2.0.alpha.20050908-2) experimental; urgency=low
+
+ * debian/rules: Also re-set the newly added variables R_SHARE_DIR,
+ R_INCLUDE_DIR and R_DOC_DIR in /usr/bin/R (Closes: #327446)
+
+ * share/perl/build-help.pl: Revert to the version from R 2.1.1 as
+ we need the now deprecated --htmllists argument in the postinst
+ and postrm scripts of several dozen r-cran-* packages.
+ * share/perl/R/Rdlists.pm: Carry build_htmlpkglists() and read_titles()
+ over from 2.1.1 to support the --htmllists code
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 10 Sep 2005 13:12:08 -0500
+
+r-base (2.2.0.alpha.20050908-1) experimental; urgency=low
+
+ * First alpha release of the upcoming R 2.2.0 planned for October 6
+
+ * debian/{control,rules}: Build-Depends switched to gcc-4.0
+ by removing "gcc-3.4, g++-3.4, g77-3.4"
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 8 Sep 2005 22:35:50 -0500
+
+r-base (2.1.1-1) unstable; urgency=low
+
+ * New upstream version 2.1.1 released today
+
+ * debian/control: Remove redundant Build-Depends on 'mawk | gawk | awk'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 20 Jun 2005 18:50:41 -0500
+
+r-base (2.1.0.beta.20050613-1) unstable; urgency=low
+
+ * Upgraded to the R 2.1.1 beta release candidate dated 2005-06-13
+
+ * debian/rules: configure call with AWK="/usr/bin/awk" (Closes: #307683)
+ * debian/control: New Build-Depends on 'mawk | gawk | awk'
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 13 Jun 2005 21:04:50 -0500
+
+r-base (2.1.0-1) unstable; urgency=low
+
+ * New upstream version 2.1.0 released today
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 18 Apr 2005 20:24:26 -0500
+
+r-base (2.0.1.beta.20050410-1) unstable; urgency=low
+
+ * Upgraded to the R 2.1.0 beta release candidate dated 2005-04-10
+
+ * With R 2.1.0 scheduled to be released on April 18, this release
+ candidate will be uploaded to unstable to allow for wider testing
+
+ * debian/rules: Also copy new file 'repositories' to /etc/R and link back
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 10 Apr 2005 21:12:25 -0500
+
+r-base (2.0.1.alpha.20050403-1) experimental; urgency=low
+
+ * Upgraded to the R 2.1.0 alpha release candidate dated 2005-04-03
+
+ * This upload is still slated for experimental; beta release
+ candidates of 2.1.0 will go into unstable
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 3 Apr 2005 16:04:29 -0500
+
+r-base (2.0.1.alpha.20050322-1) experimental; urgency=low
+
+ * Initial attempt at packaging the upcoming R 2.1.0
+
+ * debian/rules: No longer install $RHOME/bin/Rdindex
+
+ * debian/rules: No longer build the Gnome GUI which has been
+ unbundled upstream as it was never fully completed
+ * debian/control: Update r-gnome Description
+ * debian/control: r-gnome is now Binary: all, removed ${shlibs:Depends}
+ and versioned (= ${Source-Version}) part of Depends on r-base-core
+ * debian/control: Reduce Build-Depends by libgnome-dev, libzvt-dev,
+ libgtkxmhtml-dev, libglade-gnome0-dev
+ * debian/r-gnome.NEWS: New file with message about removeal of UI
+
+ * debian/control: For r-base-dev, switched from the black magic
+ "g77 | m68k, f2c | not+m68k, type-handling" to "g77, f2c" as
+ type-handling no longer allows this (Closes: #296287)
+
+ * debian/r-mathlib.shlibs: Correct to 'libRmath 1 r-mathlib (>= 2.0)'
+ with thanks to Chris Lawrence
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 21 Mar 2005 21:20:09 -0600
+
+r-base (2.0.1-4) unstable; urgency=low
+
+ * Removed erroneously left-over doc-base file (Closes: #296194)
+ * debian/r-doc-{html,pdf}.links: Link individual files, not the
+ entire manual directory, in order to circumvent a dhelp bug
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 20 Feb 2005 17:24:07 -0600
+
+r-base (2.0.1-3) unstable; urgency=low
+
+ * debian/r-doc-html.doc-base.*: Added five doc-base control files
+ to register the html documentation with doc-base (Closes: #296089)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 20 Feb 2005 07:59:53 -0600
+
+r-base (2.0.1-2) unstable; urgency=low
+
+ * debian/control: Switch the Depends: on the helper package r-base-dev
+ to libreadline5-dev to help readline5 migration (Closes: #291655)
+ * debian/control: Also switch Build-Depends: to libreadline5-dev
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 23 Jan 2005 13:39:50 -0600
+
+r-base (2.0.1-1) unstable; urgency=medium
+
+ * New upstream release
+ * Urgency medium as this version contains numerous upstream fixes,
+ as well as Debian fixes from 2.0.0-4 that have are not yet in testing
+
+ * debian/control: Add r-recommended to Depends: for r-base
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 15 Nov 2004 09:39:01 -0600
+
+r-base (2.0.0-4) unstable; urgency=medium
+
+ * Urgency medium to get the fix into the testing distribution in which
+ r-recommended currently has insufficiently detailed Depends:
+ * debian/control: Change Depends: for r-recommended to be versioned, and
+ impose a minimum standard of package versions rebuilt under R 2.0.0
+ as required by the underlying lazyloading changes (Closes: #278528)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 27 Oct 2004 20:26:31 -0500
+
+r-base (2.0.0-3) unstable; urgency=low
+
+ * Two improvements suggested by Kurt Hornik:
+ - debian/control: r-base now Depends: on r-base-core (= ${Source-Version})
+ - debian/control: Fix MASS book title in Description: of r-recommends
+
+ * Reorganisation of r-mathlib suggested and tested by Faheem Mitha:
+ - debian/control: r-mathlib now only Recommends: insteads of Depends:
+ on r-base-core and r-base-dev (Closes: #276038)
+ - debian/rules: Small changes to give r-mathlib its own doc directory
+ - debian/r-mathlib.links: Renamed to r-mathlib.links.unused disable
+
+ * Update to use of Lapack code as suggested by Doug Bates:
+ - debian/rules: Set Lapack back to --with-lapack=no
+ - debian/control: Remove "lapack3-dev | atlas3-base-dev" from Build-Depends
+ - debian/control: Remove "lapack3-dev | atlas3-base-dev | liblapack-3.so"
+ from Depends for r-base-dev as well
+ - debian/rules: Turn 'make check' back on (outside of arm)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 13 Oct 2004 20:12:30 -0500
+
+r-base (2.0.0-2) unstable; urgency=low
+
+ * src/main/startup.c: Removed 'static' on RestoreAction declaration
+ as recommend by Brian Ripley in bug report follow-up (Closes: #275791)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 11 Oct 2004 09:55:11 -0500
+
+r-base (2.0.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ * src/library/tools/R/admin.R, src/scripts/INSTALL.in: Applied
+ small patch by Brian Ripley to address package build issues
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 5 Oct 2004 17:53:51 -0500
+
+r-base (1.9.1.beta.20040929-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-29
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 29 Sep 2004 15:40:10 -0500
+
+r-base (1.9.1.beta.20040928-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-28
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+ * debian/rules: No longer install BUGS which is no longer in upstream sources
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 28 Sep 2004 22:22:52 -0500
+
+r-base (1.9.1.beta.20040925-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-25
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 25 Sep 2004 08:43:01 -0500
+
+r-base (1.9.1.beta.20040921-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-21
+ * Still uploading to 'experimental' to keep 1.9.1-3 in testing
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 21 Sep 2004 21:00:41 -0500
+
+r-base (1.9.1.alpha.20040912-1) experimental; urgency=low
+
+ * Upgraded to the R 2.0.0 alpha release candidate dated 2004-09-12
+ * Still uploading to 'experimental' as 1.9.1-3 is not yet in testing
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 12 Sep 2004 15:44:38 -0500
+
+r-base (1.9.1.alpha.20040906-1) experimental; urgency=low
+
+ * Upgraded to the initial R 2.0.0 alpha release candidate dated 2004-09-06
+
+ * Distribution set to 'experimental' as we would like the previous release
+ 1.9.1-3 to migrate to 'testing' first; as that has happened we will make
+ alpha and/or beta releases of 2.0.0 to 'unstable' prior to the formal
+ release
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 6 Sep 2004 22:00:56 -0500
+
+r-base (1.9.1-3) unstable; urgency=low
+
+ * debian/control: Expanded Depends for r-base-dev to include virtual
+ packages libblas-3.so and liblapack-3.so as final alternatives.
+ * debian/copyright: Author list updated as suggested by Kurt Hornik
+ * src/modules/gnome/system.c: Change 'R_Interactive = 1' instead of the
+ isatty() call, as suggested by Brian D. Ripley (Closes: #269107)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 31 Aug 2004 21:49:39 -0500
+
+r-base (1.9.1-2) unstable; urgency=low
+
+ * debian/r-base-core.postinst: Papersize code conditional on paperconf
+ * debian/control: Added Suggests for libpaper-utils
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 22 Jun 2004 06:33:26 -0500
+
+r-base (1.9.1-1) unstable; urgency=low
+
+ * Upgraded to version 1.9.1 released today
+
+ * debian/rules: Configure with R_PAPERSIZE='letter'
+ * debian/r-base-core.postinst: Re-wrote papersize setting code
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 21 Jun 2004 09:31:02 -0500
+
+r-base (1.9.0.beta.20040614-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.9.1 beta release candidate of 2004-06-14
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 14 Jun 2004 15:02:14 -0500
+
+r-base (1.9.0.alpha.20040607-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.9.1 alpha release candidate of 2004-06-07
+
+ * Contains upstream fix for version number in search entry of CRAN
+ packages, with thanks to Kurt Hornik (Closes: #248430)
+
+ * debian/Renviron-R_PAPERSIZE.patch: New patch to set R_PAPERSIZE in
+ /etc/R/Renviron by respecting both a prior setting and the value
+ in /etc/papersize, with thanks to Matej Cepl (Closes: #245525)
+
+ * debian/control: Remove unversioned g++ from Build-Depends [ lintian ]
+ * debian/control: r-mathlib, r-recommended get versioned Depends
+ on r-base-core as doc directories are symlinked [ lintian ]
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 8 Jun 2004 07:00:41 -0500
+
+r-base (1.9.0-1) unstable; urgency=low
+
+ * Upgraded to version 1.9.0 released today
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 12 Apr 2004 07:30:12 -0500
+
+r-base (1.8.1.cvs.20040410-1) unstable; urgency=low
+
+ * Upgraded to beta release candidate 2004-04-10 of R 1.9.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 11 Apr 2004 22:27:32 -0500
+
+r-base (1.8.1.cvs.20040331-1) unstable; urgency=low
+
+ * Upgraded to beta release candidate 2004-03-31 of R 1.9.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 1 Apr 2004 14:50:52 -0600
+
+r-base (1.8.1.cvs.20040321-1) unstable; urgency=low
+
+ * Upgraded to beta release candidate 2004-03-21 of R 1.9.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 21 Mar 2004 18:35:03 -0600
+
+r-base (1.8.1.cvs.20040314-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2004-03-14 of R 1.9.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 14 Mar 2004 17:37:03 -0600
+
+r-base (1.8.1.cvs.20040307-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2004-03-07 of R 1.9.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 7 Mar 2004 08:29:00 -0600
+
+r-base (1.8.1.cvs.20040229-2) unstable; urgency=low
+
+ * debian/control: Declare Replaces: r-recommended as well for r-base-html
+ and r-base-latex as they contain parts of 'grid' which used to be in
+ r-recommended, but is now in r-base-core and these two (Closes: #235891)
+
+ * debian/rules: Do not ship usr/share/info/dir(.old) (Closes: #235713)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 2 Mar 2004 20:33:18 -0600
+
+r-base (1.8.1.cvs.20040229-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2004-02-29 of R 1.9.0
+
+ * debian/rules changes to configure call
+ --without-r-recommended (as r-recommended is now a meta-package)
+ --with-bzlib to override default of no
+ --with-pcre to override default of no
+ --with-zlib to override default of no
+ R_BROWSER=sensible-browser to not depend on mozilla
+
+ * debian/control: r-base-core Replace r-recommended (<= 1.8.1-1) as
+ the grid package moved
+
+ * debian/control: r-recommended is now a metapackage that depends on the
+ individual packages which are now part of the Debian distribution;
+ and added appropriate Depends for all of them
+ * debian/rules: Hence 'configure [...] --without-recommended-packages [...]'
+ * debian/control: Added Conflicts: r-recommended (<< 1.9.0) to r-base-core
+
+ * debian/rules: In make-arch target, now call "make docs" with
+ R_CMD_BUILD_HELP_OPTS="--txt --example" to build only the documentation
+ needed for binary-arch targets (thanks to Kurt Hornik for enabling this)
+
+ * debian/rules: configure with PAGER=/usr/bin/pager as all the good
+ reasons pointed out in #230524 regarding octave2.1 apply to R too
+
+ * debian/control: Depends for r-base-dev changed from the imperfect
+ "g77 | f2c" to to "g77 | m68k, f2c | not+m68k, type-handling" with
+ thanks to Wouter Verhelst
+
+ * debian/control: Changed Build-Depends from 'blas-dev (>=1.0-9),lapack-dev'
+ to 'refblas3-dev | atlas3-base-dev, lapack3-dev | atlas3-base-dev'
+ * debian/control: Dito for Depends: for r-base-dev
+ * debian/rules: Set configure arguments for refblas3/atlas3 and
+ lapack3/atlas3, respectively, instead of blas/atlas v2.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 29 Feb 2004 16:55:55 -0600
+
+r-base (1.8.1-2) unstable; urgency=low
+
+ * debian/control: Added to Build-Depends
+ libpaper-utils for paperconf
+ libjpeg62-dev for jpeg (thanks to Kurt Hornik for the suggestion)
+ libprce3-dev for pcre
+ linpng12-dev for png
+ zlib1g-dev for zlib
+
+ * debian/control: Added to Depends for r-base-dev
+ libjpeg62-dev, libpcre3-dev (thanks to Kurt Hornik for the suggestion)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 19 Jan 2004 10:45:47 -0600
+
+r-base (1.8.1-1) unstable; urgency=low
+
+ * Upgraded to version 1.8.1 released today
+
+ * debian/control: Move r-base-html and r-base-latex from the Depends: for
+ r-base to Recommends: as one cannot depend on packages of lower priority
+ * debian/rules: Use --without-blas on arm
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 21 Nov 2003 10:09:48 -0600
+
+r-base (1.8.0.cvs.20031114-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.8.1 beta release of 2003-11-14
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 14 Nov 2003 19:13:43 -0600
+
+r-base (1.8.0.cvs.20031107-1) unstable; urgency=low
+
+ * Upgraded to the initial 1.8.1 alpha release of 2003-11-07
+ * debian/rules: Configure with R_PRINTCMD=/usr/bin/lpr (Closes: #219419)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 7 Nov 2003 19:56:48 -0600
+
+r-base (1.8.0.cvs.20031101-1) unstable; urgency=low
+
+ * Upgraded to 1.8.0 patched aka pre-1.8.1 as of 2003-11-01
+ * Also upgraded R-recommended via rsync
+ * debian/rules: make docs has to be called when binary-arch is built
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 1 Nov 2003 18:58:09 -0600
+
+r-base (1.8.0.cvs.20031024-1) unstable; urgency=low
+
+ * Upgraded to 1.8.0 patched as of 2003-10-24
+ * Also upgraded R-recommended via rsync
+ * To avoid possible upgrade conflicts with pre-releases of 1.8.1, we
+ use previously used ".cvs.YYYYMMDD" naming convention for the package
+ * debian/rules: 'make {docs,help,html}' are now called in binary-indep
+ which was not possible with earlier versions of R; however as make
+ recommended implies make doc, we manually descend into its top dir.
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 23 Oct 2003 15:21:35 -0500
+
+r-base (1.8.0-2) unstable; urgency=low
+
+ * With a big thanks to Camm Maguire for investigating this problem,
+ we are reverting back to the previously used setup of defaulting to
+ Blas while automagically switching to Atlas where installed:
+ - debian/rules: Patch R.sh.in to disable use of R_LD_LIBRARY_PATH (beyond
+ the required $R_HOME/nbin) which conflicts with Debian's transparent
+ switch of Atlas for Blas (as /usr/lib/libblas would be found instead)
+ - debian/rules: Configure again with --with-blas=blas
+ - debian/control: Hence remove Depends: on atlas2-base-dev | atlas2-dev
+ - debian/shlibs.local: Remove, no longer needed
+ - debian/rules: No longer need to postprocess Depends
+ - debian/rules: Other small cleanups
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 16 Oct 2003 20:13:32 -0500
+
+r-base (1.8.0-1) unstable; urgency=low
+
+ * Upgraded to version 1.8.0 released today
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 8 Oct 2003 10:10:41 -0500
+
+r-base (1.7.1.cvs.20031004-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0beta_2003-10-04 of R 1.8.0
+ * debian/control: Change Depends: to atlas2-base-dev | atlas2-dev
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 4 Oct 2003 07:39:13 -0500
+
+r-base (1.7.1.cvs.20030927-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0beta_2003-09-27 of R 1.8.0
+ * debian/control: Add Depends: on atlas2-dev for r-base-dev
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 27 Sep 2003 15:58:45 -0500
+
+r-base (1.7.1.cvs.20030920-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0alpha_2003-09-20 of R 1.8.0
+ * debian/{r-base-core,r-gnome}.menu: Small beautifications
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 20 Sep 2003 08:02:54 -0500
+
+r-base (1.7.1.cvs.20030913-1) unstable; urgency=low
+
+ * Upgraded to release candidate 1.8.0alpha_2003-09-13 of R 1.8.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 13 Sep 2003 09:59:45 -0500
+
+r-base (1.7.1.cvs.20030906-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-09-06 of R 1.8.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 6 Sep 2003 15:21:02 -0500
+
+r-base (1.7.1.cvs.20030830-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-30 of R 1.8.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 30 Aug 2003 09:56:10 -0500
+
+r-base (1.7.1.cvs.20030822-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-22 of R 1.8.0
+ * debian/control: Standards-Version increased to 3.6.1.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 22 Aug 2003 20:25:52 -0500
+
+r-base (1.7.1.cvs.20030814-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-14 of R 1.7.2 (or 1.8.0)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 14 Aug 2003 20:39:05 -0500
+
+r-base (1.7.1.cvs.20030808-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-08-08 of R 1.7.2 (or 1.8.0)
+ * Upstream release candidate sources do not contain the source for the
+ r-recommended package so tools/rsync-recommended was used to obtain
+ these and a new, Debian-only, orig.tar.gz of both was created
+ * debian/control: r-base-dev now has a versioned Depends on r-base-core
+ which requires equal version numbers between the two (Closes: #199295)
+ * debian/control: Upgraded Standards-Version to 3.6.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 8 Aug 2003 20:08:49 -0500
+
+r-base (1.7.1-1) unstable; urgency=low
+
+ * New upstream version 1.7.1 released today
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 16 Jun 2003 19:36:45 -0500
+
+r-base (1.7.0.cvs.20030607-1) unstable; urgency=low
+
+ * Upgraded to initial release candidate (dated 2003-06-07) of R 1.7.1
+ * debian/{control,rules}: Switch back to default compiler version as 3.3
+ is in unstable and testing; m68k still needs f2c for Fortan code
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 7 Jun 2003 12:23:59 -0500
+
+r-base (1.7.0.cvs.20030602-1) unstable; urgency=low
+
+ * Upgraded to initial release candidate (dated 2003-06-02) of R 1.7.1
+ * debian/{rules,control}: Try f2c on m68k as a last resort
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 2 Jun 2003 21:31:42 -0500
+
+r-base (1.7.0.cvs.20030526-1) unstable; urgency=low
+
+ * Upgraded to release candidate 2003-05-26 of R 1.7.1
+ * Manually rsync'ed r-recommendeds sources as R-patched pre-release do
+ not comprise r-recommended, also manually re-built upstream tarball
+ * debian/control: Require gcc/g++/g77-3.2 as version 3.3 is in unstable
+ gcc 3.2 works fine everywhere with the exception of m68k (Closes: #194175)
+ * debian/shlibs.local: Have libatlas imply either the actual atlas2-base
+ or the virtual atlas2 provided by tuned libraries (Closes: #193831)
+ * debian/control: Added 'xpdf-reader | pdf-viewer' to Build-Depends
+ * debian/control: Upgraded Standards-Version to 3.5.10
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 26 May 2003 19:47:20 -0500
+
+r-base (1.7.0-3) unstable; urgency=low
+
+ * debian/rules: No longer configure for use of an external lapack library
+ as some numerical infelicities have come up on shore.
+ * debian/rules: Now call configure --with-blas=atlas for Atlas / Blas
+ * debian/shlibs.local: add '| blas | blas2' to 'libatlas 2 atlas2-base'
+ * debian/control: r-gnome Recommends: r-cran-gtkdevice (Closes: #190735)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 28 Apr 2003 20:56:54 -0500
+
+r-base (1.7.0-2) unstable; urgency=low
+
+ * debian/control: r-recommended Description updates w.r.t. MASS edition
+ * debian/rules: Remove Depends of r-recommended on atlas2-base as it is
+ neither 'virtual' nor required as r-recommnded itself depends on
+ r-base-core so that we get its Depends on atlas2-base | blas2 | blas
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 20 Apr 2003 20:18:56 -0500
+
+r-base (1.7.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Wed, 16 Apr 2003 10:43:57 -0500
+
+r-base (1.6.2.cvs.20030413-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-04-13 of R 1.7.0
+ * debian/control: Section set to gnome for r-gnome
+ * debian/r-recommended.preinst: rm doc dir (Closes: #188995)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 14 Apr 2003 20:35:32 -0500
+
+r-base (1.6.2.cvs.20030409-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-04-09 of R 1.7.0
+ * debian/rules: Hack result of dh_shlibdeps with Perl to remove the
+ double atlas2 entry caused by the virtual depends on blas and lapack
+ * debian/rules: Small improvement to R_LIBS patch to conform with
+ standard of respecting prior settings, if any, of the variable
+ * debian/control: Upgraded Standards-Version to 3.5.9
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 9 Apr 2003 23:09:00 -0500
+
+r-base (1.6.2.cvs.20030405-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-04-05 of R 1.7.0
+ * debian/rules: Configure with --with-blas, not --with-blas=blas
+ * debian/r-base-core.prerm: s/treu/true/
+ * debian/rules: Link $R_HOME/doc into /usr/share/doc/r-base-core, rather
+ than its subdirectories doc and manual as e.g. manual link could be
+ dangling if r-doc-pdf is not installed (Closes: #187573)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sat, 5 Apr 2003 08:35:37 -0600
+
+r-base (1.6.2.cvs.20030403-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-04-03 of R 1.7.0
+ * debian/rules: Add R_LIBS setting to /etc/R/Renviron such that
+ user-installed packages will be in /usr/local/lib/R/site-library,
+ Debian packages will install into /usr/lib/R/site-library and
+ the r-base-core and r-recommended packages will use the standard
+ /usr/lib/R/library directory
+ * debian/r-base-core.dirs: Add /usr/lib/R/site-library
+ * debian/r-base-core.postinst: Add failsafe creation of directory
+ /usr/local/lib/R/site-library as per Policy section 10.1.2
+ * debian/r-base-core.prerm: Add failsafe creation of directory
+ /usr/local/lib/R/site-library as per Policy section 10.1.2
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 3 Apr 2003 10:16:06 -0600
+
+r-base (1.6.2.cvs.20030331-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-03-30 of R 1.7.0
+ * debian/control: Added lapack-dev to Depends for r-base-dev
+ * debian/rules: Removed rrecommended tests
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 31 Mar 2003 09:01:22 -0600
+
+r-base (1.6.2.cvs.20030330-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-03-30 of R 1.7.0
+ * Upstream sources fix the problem reported in #186857 (Closes: #186857)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 30 Mar 2003 16:08:48 -0600
+
+r-base (1.6.2.cvs.20030326-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-03-26 of R 1.7.0
+ * debian/rules: Configure with --with-lapack
+ * debian/control: Build-Depends on lapack-dev
+ * debian/rules: Explicitly use gcc/g77/g++-3.2 for builds on testing
+ * debian/r-gnome.menu: The Needs: entry was corrected to "x11"
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 26 Mar 2003 09:19:07 -0600
+
+r-base (1.6.2-2) unstable; urgency=low
+
+ * Rebuilding on Debian unstable with gcc/g++/g77 as the new default
+ * debian/control: Depends g77 (>= 3.2.2), g++ (>= 3.2.2) for r-base{,-dev}
+ * debian/rules: Adjusted accordingly by defaulting to gcc, g++, g77
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 18 Jan 2003 20:21:21 -0600
+
+r-base (1.6.2-1) unstable; urgency=low
+
+ * New upstream version 1.6.2 released today
+ * debian/r-base-core.lintian: Added exceptions for
+ image-file-in-usr-lib usr/lib/R/doc/html/{left,logo,logosm,right,up}.jpg
+ * debian/rules: Substitute Perl path to /usr/bin/perl for
+ usr/lib/R/bin/{Rdconv,Rdindex,Rprof,Sd2Rd,build,check}
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 10 Jan 2003 20:30:26 -0600
+
+r-base (1.6.1.cvs.20030103-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2003-01-03 of R 1.6.2
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 3 Jan 2003 09:42:18 -0600
+
+r-base (1.6.1.cvs.20021230-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2002-12-30 of R 1.6.2
+ * Added Douglas Bates as an Uploader following email discussion with Dirk
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 30 Dec 2002 20:43:24 -0600
+
+r-base (1.6.1-3) unstable; urgency=low
+
+ * debian/{control,rules}: Configure switch from f2c to g77 for m68k
+ * debian/{control,rules}: Configure switch from tcl/tk8.3 to tcl/tk8.4
+ * debian/control: Added libpaperg-dev to Build-Depends (Closes: #168259)
+ * debian/r-base-control: Substitute result from paperconf call
+ into $R_HOME/etc/Renviron, not /usr/bin/R
+ * debian/rules: Move $R_HOME/etc/* files into /etc/R/ (Closes: #170018)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 28 Nov 2002 07:49:49 -0600
+
+r-base (1.6.1-2) unstable; urgency=low
+
+ * Rebuilt with support for bzip2 (compression) and pcre (reg.expressions)
+ * debian/control: Added libbz2-dev and libpcre3-dev to Build-Depends
+ * debian/rules: Set R_BROWSER to /usr/bin/mozilla in $R_HOME/etc/Renviron
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 11 Nov 2002 13:26:27 -0600
+
+r-base (1.6.1-1) unstable; urgency=low
+
+ * Upgraded to R version 1.6.1 released today
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 1 Nov 2002 16:56:50 -0600
+
+r-base (1.6.0.rel.20021024-1) unstable; urgency=low
+
+ * Upgraded to release candidate dated 2002-10-24 of R 1.6.1
+ * debian/control: Set section for r-base-dev to devel
+ * debian/r-doc-info.prerm: Add upgrade target
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 24 Oct 2002 21:01:49 -0500
+
+r-base (1.6.0.rel.20021017-1) unstable; urgency=low
+
+ * Upgraded to first release candidate (dated 2002-10-17) of R 1.6.1
+ * Since 1.6.0, the R Core upstream stream now bundles the sources
+ of the r-recommended package directly in the r-base sources -- thus
+ the source package r-recommended will be replaced by a binary
+ package derived from these sources
+ * debian/control: Added new package r-recommended
+ * debian/r-recommended.{files,links}: Defined accordingly
+ * debian/copyright: Include the copyright file from r-recommended
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 17 Oct 2002 20:53:49 -0500
+
+r-base (1.6.0.rel-1) unstable; urgency=low
+
+ * Upgraded to new upstream release 1.6.0 [ which we need to rename
+ 1.6.0.rel so that is sorts higher than 1.6.0.rc.20020927 ]
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 1 Oct 2002 21:18:52 -0500
+
+r-base (1.6.0.rc.20020927-1) unstable; urgency=low
+
+ * Upgraded to new release candidate of R 1.6.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 26 Sep 2002 20:49:34 -0500
+
+r-base (1.6.0.rc.20020917-1) unstable; urgency=low
+
+ * Upgraded to new release candidate of R 1.6.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 16 Sep 2002 20:41:58 -0500
+
+r-base (1.6.0.rc.20020910-1) unstable; urgency=low
+
+ * First release candidate of R 1.6.0 which is scheduled to be released on
+ October 1, 2002 -- this release corresponds to the first feature freeze
+ * debian/control: More Suggests: of the r-doc-* packages
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 9 Sep 2002 20:53:41 -0500
+
+r-base (1.5.1-0woody1) woody-proposed-updates; urgency=low
+
+ * Backport for woody built against atlas with corrected virtual Depends
+ on blas/atlas to prevent bugs like #150253 and #152284 in woody
+ * debian/rules: Use "-O0 -g0" on arm and m68k to shorten compile time
+ * debian/control: Added lib{ncurses5,readline4}-dev to r-base-dev Depends
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 15 Jul 2002 21:19:51 -0500
+
+r-base (1.5.1-1) unstable; urgency=low
+
+ * Upgraded to new upstream release 1.5.1
+ * debian/rules: Also create link from libRmath.so to libRmath.so.1
+ * debian/rules: Include test.c example in r-mathlib (Closes: #149723)
+ * debian/README.mathlib: Added, includes src/nmath/standalone/README
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 17 Jun 2002 19:24:59 -0500
+
+r-base (1.5.0-3) unstable; urgency=low
+
+ * debian/r-doc-html.links: Link into /usr/lib/R/doc/manual (Closes: #148628)
+ * debian/r-doc-pdf.links: Idem
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 8 Jun 2002 11:52:14 -0500
+
+r-base (1.5.0-2) unstable; urgency=low
+
+ * debian/rules: Remove usr/share/info/dir{,.old} (Closes: #148054)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 27 May 2002 15:31:22 -0500
+
+r-base (1.5.0-1) unstable; urgency=low
+
+ * Upgraded to new upstream release 1.5.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 29 Apr 2002 18:23:59 -0500
+
+r-base (1.4.1.cvs20020421-1) unstable; urgency=low
+
+ * Upgraded to new release candidate 2002-04-21 of R 1.5.0
+ * debian/control: Added virtual fortran77-compiler, c-compiler to the
+ list of alternative compilers that r-base-dev Depends: on
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 21 Apr 2002 19:01:57 -0500
+
+r-base (1.4.1.cvs20020414-1) unstable; urgency=low
+
+ * Upgraded to new release candidate 2002-04-14 of R 1.5.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 13 Apr 2002 20:48:59 -0500
+
+r-base (1.4.1.cvs20020407-1) unstable; urgency=low
+
+ * Upgraded to new release candidate 2002-04-07 of R 1.5.0
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 7 Apr 2002 07:59:43 -0500
+
+r-base (1.4.1.cvs20020331-1) unstable; urgency=low
+
+ * Upgraded to new release candidate 2002-03-23 of R 1.5.0
+
+ * debian/control: Build-Depends on texinfo (>= 4.1-2) to ensure that
+ we will not be bitten by the epsf.tex bug
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 31 Mar 2002 08:55:08 -0600
+
+r-base (1.4.1.cvs20020323-1) unstable; urgency=low
+
+ * Upgraded to new release candidate 2002-03-23 of R 1.5.0
+
+ * debian/control: New packages r-base-core, r-base-html, r-base-latex
+ and r-doc-info have been split from the old r-base package which now
+ Depends: on these, but can also be removed -- this adds some extra
+ flexibility and can save over eight megabytes of installed files.
+ * debian/control: Replaces: r-base (<= 1.4.1-1) for the new packages
+
+ * debian/rules: Fortan compiler selection adapted to new upstream configure
+ * debian/control: r-base Suggests: r-base-dev instead of gcc
+ * debian/copyright: Updated and included current COPYRIGHTS file ...
+ * debian/rules: ... and therefore do not install COPYRIGHTS separately
+ * debian/control: Added Build-Depends on texi2html (split from tetex-bin)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sat, 23 Mar 2002 11:17:48 -0600
+
+r-base (1.4.1-1) unstable; urgency=low
+
+ * Upgraded to new upstream release 1.4.1
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 30 Jan 2002 18:50:34 -0600
+
+r-base (1.4.0.cvs20020124-1) unstable; urgency=low
+
+ * Upgraded to the R-patched_2002-01-24 release candidate for 1.4.1
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 24 Jan 2002 19:38:34 -0600
+
+r-base (1.4.0-1) unstable; urgency=low
+
+ * Upgraded to new upstream release 1.4.0
+ * debian/control: Add lib{zvt,gtkxmhtml}-dev to Build-Depends [thanks, Doug]
+ * debian/control: Fixed hppa Build-Depends [thanks, Matthew Wilcox]
+ * debian/rules: Minor cleanup regarding configuration options
+ * debian/control: Changed Priority: from extra to optional
+ * debian/control: Corrected r-doc-html Description [thanks, Doug Bates]
+ * debian/control: Spelling corrections (Closes: #125300)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Wed, 19 Dec 2001 18:47:46 -0600
+
+r-base (1.3.1-6) unstable; urgency=low
+
+ * debian/rules: Also apply s/-lg2c/-lg2c-pic/ on etc/Makeconf
+ * debian/control: Revert to Arch: all for doc packages, no Depends r-base
+ * debian/control: r-base-dev Depends remodelled on r-base Build-Depends
+
+ -- Dirk Eddelbuettel <edd@debian.org> Mon, 3 Dec 2001 21:58:40 -0600
+
+r-base (1.3.1-5) unstable; urgency=low
+
+ * debian/rules: Unset CPPFLAGS, LIBS before calling configure to not
+ leave traces of /usr/local. Thanks, Kurt Hornik (Closes: #71917)
+ * debian/rules: More s/-lg2c/-lg2c-pic/ substitution in src/library/
+ * debian/control: Added new package r-mathlib (Closes: #119701)
+ * debian/control: Added new package r-doc-html (R manuals in html format)
+ * debian/rules: Added suitable rules for r-mathlib and r-doc-html
+ * debian/rules: Rewritten/cleaned for DH_COMPAT=3
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 16 Nov 2001 20:43:24 -0600
+
+r-base (1.3.1-4) unstable; urgency=low
+
+ * debian/control: Corrected maintainer email
+ * debian/rules: Do not run 'make check' on arm as it stumbles over the
+ Bessel example; this known misfeature has long been reported upstream
+ * debian/README.Atlas: Updated to reflect autoMAGIC loading of Atlas lib
+ with ldconfig from libc6_2.2.4-5 or later -- thanks, Ben Collins!
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 11 Nov 2001 11:19:10 -0600
+
+r-base (1.3.1-3) unstable; urgency=low
+
+ * New maintainer
+ * debian/rules: Substitute -lg2c-pic for -lg2c in Makeconf [Thanks, Jeff!]
+ * debian/control: Following advice from the Release Manager, let r-doc-pdf
+ and r-base-dev be Arch: any as they Depends: on r-base itself
+ * debian/rules: configure with tkConfig.sh,tclConfig.sh for 8.3 support
+ * debian/control: Build-Depends on tcl8.3-dev and tk8.3-dev
+ * debian/rules: Let ia64 use gcc-3.0, g77-3.0, g++-3.0
+ * debian/control: Build-Depends adjusted accordingly
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 9 Nov 2001 20:17:43 -0600
+
+r-base (1.3.1-2) unstable; urgency=low
+
+ * Non-maintainer upload, coordinated with the maintainer
+ * Fixed local teTeX issue so that pdf manuals are built (Closes: #112184)
+ * debian/*.links: link r-doc-pdf, r-gnome, r-base-dev doc dir to r-base
+ * debian/*.preinst: rm doc dir for r-doc-pdf, r-gnome, r-base-dev
+ * debian/control: r-base-dev and r-doc-pdf now depend on r-base
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 14 Sep 2001 21:53:24 -0500
+
+r-base (1.3.1-1) unstable; urgency=low
+
+ * Non-maintainer upload, coordinated with the maintainer
+ * Upgraded to new upstream release 1.3.1
+ * src/scripts/R.sh.in: Modified to detect libs from /etc/ld.so.conf so
+ that Atlas is now used automatically when installed, providing very
+ significant performance gains. Thanks for Kurt Hornik for the sed magic.
+ * debian/control: Build-Depends for f2c on m68k, g77 everywhere else
+ * debian/rules: Use f2c on m68k, g77 everywhere else
+ * debian/rules: Compile with -O on m68k, -O2 everywhere else. Thanks
+ to Christian Steigies for countless m68k tests and compilations
+ * debian/r-base.lintian: Added Lintian excpeptions clauses:
+ -- for files not under md5sum creation as their content changes
+ -- for spurious 'extra license' on license() command documentation
+ * debian/rules: Also remove redundant /usr/lib/R/COPYING.LIB, but add
+ soft links for both GPL (to COPYING) and LGPL (to COPYING.LIB)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 4 Sep 2001 22:28:49 -0500
+
+r-base (1.3.0-4) unstable; urgency=low
+
+ * Non-maintainer brown-bag release
+ * debian/control: Revert back to tcl and tk version 8.0
+ * debian/rules: Split off distinct configure and make targets
+
+ -- Dirk Eddelbuettel <edd@debian.org> Fri, 24 Aug 2001 09:30:17 -0500
+
+r-base (1.3.0-3) unstable; urgency=low
+
+ * Non-maintainer upload, coordinated with the maintainer
+ * debian/rules: Default to --with-blas=blas (available on 9 architectures),
+ Atlas can dynamically override this where available (Closes: #105366)
+ * debian/control: Changed atlas reference to blas for Build-Depends,
+ requires versioned Build-Depends on blas-dev (>= 1.0-9)
+ * debian/rules: Added link for manual below r-base/doc (Closes: #106315)
+ * debian/control: Upgraded Build-Depends: on tk and tcl to versions 8.3
+ * debian/control: Upgraded Standards-Version: to 3.5.0
+ * debian/control: Added r-recommended to Suggests:
+ * debian/rules: Remove modules/*.so on clean
+ * debian/README.Atlas: Added simple README file on Atlas
+ * doc/manual/Makefile.in: Added --no-split to makeinfo --html calls
+ * config.site: gcc-3.0 removed in -2 (Closes: #109030)
+ * debian/control: Make was added to Depends in -2 (Closes: #102831)
+
+ -- Dirk Eddelbuettel <edd@debian.org> Tue, 21 Aug 2001 22:33:00 -0500
+
+r-base (1.3.0-2) unstable; urgency=low
+
+ * Changed compiler back to gcc from gcc-3.0
+ * Added dependency of r-base-dev on make (Closes: #102831)
+ * Removed dependency of r-base-dev on wget|lynx
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 6 Jul 2001 17:33:20 -0500
+
+r-base (1.3.0-1) unstable; urgency=low
+
+ * New upstream release
+ * Changed build-depends on groff to groff-base
+ * Changed build of r-gnome package for R's new module architecture
+ * Added Dirk E.'s changes to rules and control so atlas is used only on
+ selected architectures.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 29 Jun 2001 09:29:47 -0500
+
+r-base (1.2.3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 20 May 2001 20:51:58 -0500
+
+r-base (1.2.2-2) unstable; urgency=low
+
+ * Corrected format of Closes line (see 1.2.2-1). (Closes: #83876)
+ * Added more build-depends entries. (Closes: #89267)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 11 Mar 2001 10:26:36 -0600
+
+r-base (1.2.2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Added build-depends entries. (Closes #83876)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Tue, 27 Feb 2001 12:50:13 -0600
+
+r-base (1.2.1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 15 Jan 2001 07:01:21 -0600
+
+r-base (1.2.0-1) unstable; urgency=low
+
+ * New upstream release.
+ * Added the r-base-dev package to create the correct dependencies for
+ installing R packages from CRAN (Comprehensive R Archive Network)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 15 Dec 2000 07:20:51 -0600
+
+r-base (1.1.0-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sat, 17 Jun 2000 13:11:26 -0500
+
+r-base (1.0.1-1) unstable; urgency=low
+
+ * New upstream release.
+ * Includes fix for problem with xaxt and yaxt (Closes #61984)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 16 Apr 2000 13:50:06 -0500
+
+r-base (1.0.0-2) unstable; urgency=low
+
+ * The pdf documentation is now in a new package r-doc-pdf
+ * A GNOME-enabled version is available in a new package r-gnome (Closes #44503)
+ * debian/{rules,control}: Modified accordingly
+ * Thanks to Dirk Eddelbuettel who did most of the work for this.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 16 Mar 2000 16:28:07 -0600
+
+r-base (1.0.0-1) unstable; urgency=low
+
+ * New upstream version
+ * Fixed names of info files, readline support (Closes: #57774)
+ * Added pdf files to doc directory (Closes: #20227)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 9 Mar 2000 16:28:29 -0600
+
+r-base (0.99.0-2) unstable; urgency=low
+
+ * Small but important bug fixes in upstream sources
+ * Removed dependence on atlas2 - using blas1 instead
+ * Recompiled to use the readline library
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 13 Feb 2000 14:23:25 -0600
+
+r-base (0.99.0-1) unstable; urgency=low
+
+ * New upstream release
+ * Added creation and installation of info documentation
+ * Created the PDF documentation and added it to the doc directory
+ * Added dependence on the atlas2 package and used the atlas blas
+ * Added /usr/bin/X11 to the path before configuring so imake is found
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 7 Feb 2000 10:36:44 -0600
+
+r-base (0.90.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Tue, 14 Dec 1999 10:51:10 -0600
+
+r-base (0.90.0-2) unstable; urgency=low
+
+ * added Conflicts: r-cran in control (Closes: #51673)
+ * Reinstated -Xfoo flags in call to dh_md5sums for Bug#35744
+ * Set up --mandir so package builds with -rfakeroot (Closes: #51901)
+ * Undid Dirk's marking of Rd2txt.1 Rdindex.1 Sd2Rd.1 as undocumented
+ (the manual pages are symbolic links to the Rdconv.1 page)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 5 Dec 1999 15:03:52 -0600
+
+r-base (0.90.0-1) unstable; urgency=low
+
+ * Non-maintainer upload dealing with the usr/doc to usr/share/doc
+ transition, as well as a few other lintian errors and warnings
+ * debian/postinst: added #DEBHELPER# stub
+ * debian/rules: configure with mandir=/usr/share/man
+ * debian/rules: remove extra licenses
+ * debian/rules: also install docs BUGS PLATFORMS VERSION Y2K
+ * debian/rules: mark Rd2txt.1 Rdindex.1 Sd2Rd.1 as undocumented
+ * debian/dirs: change usr/doc to usr/share/doc
+
+ -- Dirk Eddelbuettel <edd@debian.org> Thu, 25 Nov 1999 20:46:56 -0500
+
+r-base (0.90.0-0) unstable; urgency=low
+
+ * new upstream release
+ * Added a "suggests" entry in control for the ess package
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 25 Nov 1999 13:08:19 -0600
+
+r-base (0.65.1-2) unstable; urgency=low
+
+ * Changed from use of zip/unzip to minizip/miniunzip (Bug#48742)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sat, 30 Oct 1999 15:04:42 -0500
+
+r-base (0.65.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 8 Oct 1999 10:04:55 -0500
+
+r-base (0.65.0-1) unstable; urgency=low
+
+ * New upstream release
+ * Added dependency on unzip package
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 27 Aug 1999 09:30:14 -0500
+
+r-base (0.64.2-1) unstable; urgency=low
+
+ * New upstream release
+ * Changed dependency from perl to perl5 as per new policy.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 1 Jul 1999 09:05:03 -0500
+
+r-base (0.64.1-1) unstable; urgency=low
+
+ * New upstream release
+ * Change definition of RHOME in /usr/lib/R/bin/R shell script (Bug#37339)
+ * Add links so /usr/lib/R/doc/manual .tex files can be LaTeX'd (Hubert Palme)
+ * Re-introduced md5sum's but with files that can change removed (Bug#35744)
+ * Removed arbitrary --vsize and --nsize flags in R script.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Wed, 12 May 1999 11:48:22 -0500
+
+r-base (0.64.0-2) unstable; urgency=low
+
+ * removed md5sums from control information (Bug#35744)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 8 Apr 1999 08:48:32 -0500
+
+r-base (0.64.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 1 Apr 1999 11:03:17 -0600
+
+r-base (0.63.3-2) unstable; urgency=low
+
+ * Recompile for glibc2.1 to fix __setfpucw bug (Bug#34598)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Wed, 17 Mar 1999 13:42:41 -0600
+
+r-base (0.63.3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 4 Mar 1999 09:20:41 -0600
+
+r-base (0.63.2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 15 Jan 1999 09:25:20 -0600
+
+r-base (0.63.1-1) unstable; urgency=low
+
+ * New upstream release
+ * Linked html directory to /usr/doc/r-base/doc/html (Dirk Eddelbuettel)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 4 Dec 1998 14:22:19 -0600
+
+r-base (0.63.0-2) unstable; urgency=low
+
+ * recompiled against libc6-dev_2.0.7u-6 for __register_frame_info fix
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 29 Nov 1998 15:39:48 -0600
+
+r-base (0.63.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Wed, 18 Nov 1998 13:33:58 -0600
+
+r-base (0.62.4-1) frozen unstable; urgency=low
+
+ * New upstream release
+ * Fixed link to html directory in /usr/doc (Closes: Bug#26444)
+ * Check for /usr/bin/paperconf in postinst and set default R_PAPERSIZE (Closes: #26447)
+ * Remove src/lib directory in debian/rules clean (Closes: #28545)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 2 Nov 1998 09:29:20 -0600
+
+r-base (0.62.3-0) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Wed, 19 Aug 1998 10:38:08 -0500
+
+r-base (0.62.2-2) unstable; urgency=low
+
+ * Cleaned up the build process by removing redundancies in config.site
+ and debian/rules.
+ * Changed C compiler to gcc instead of egcs.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 14 Aug 1998 13:52:34 -0500
+
+r-base (0.62.2-1) unstable; urgency=low
+
+ * Re-configured to include the readline library
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 14 Aug 1998 11:38:35 -0500
+
+r-base (0.62.2-0) unstable; urgency=low
+
+ * New upstream version
+
+ -- Douglas Bates <bates@stat.wisc.edu> Tue, 14 Jul 1998 13:36:15 -0500
+
+r-base (0.62.1-2) unstable; urgency=low
+
+ * Corrected definition of RHOME in /usr/bin/R (bug#23621)
+
+ * Changed default heap size to 8 Mb. and number of cons cells to 400000
+
+ -- Douglas Bates <bates@stat.wisc.edu> Wed, 17 Jun 1998 11:48:28 -0500
+
+r-base (0.62.1-1) unstable; urgency=low
+
+ * new upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Tue, 16 Jun 1998 10:03:49 -0500
+
+r-base (0.61.3-0) unstable; urgency=low
+
+ * new upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 4 May 1998 12:05:53 -0500
+
+r-base (0.61.2-2) frozen unstable; urgency=low
+
+ * recompiled against xlib6g (bug #21027)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 13 Apr 1998 14:05:33 -0500
+
+r-base (0.61.2-1) frozen unstable; urgency=low
+
+ * Added symbolic link for /usr/lib/R/library in /usr/doc/r-base/ (bug#20190)
+
+ -- Douglas Bates <bates@stat.wisc.edu> Thu, 26 Mar 1998 14:01:57 -0600
+
+r-base (0.61.2-0) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 9 Mar 1998 15:22:31 -0600
+
+r-base (0.61.1-5) unstable; urgency=low
+
+ * Removed call to dh_du in build rules.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Fri, 6 Mar 1998 13:47:54 -0600
+
+r-base (0.61.1-4) unstable; urgency=low
+
+ * Removed unnecessary call to dh_makeshlibs in build rules
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 16 Feb 1998 13:49:44 -0600
+
+r-base (0.61.1-3) unstable; urgency=low
+
+ * Re-compiled to add readline support.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sat, 17 Jan 1998 17:06:52 -0600
+
+r-base (0.61.1-2) unstable; urgency=low
+
+ * Ensured that libraries for the modules are dynamically linked.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Wed, 14 Jan 1998 08:31:53 -0600
+
+r-base (0.61.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Mon, 12 Jan 1998 09:30:04 -0600
+
+r-base (0.61.0-3) unstable; urgency=low
+
+ * Went through all the warnings reported by -Wall to produce a patch
+ file for the developers.
+ * Applied Thomas Lumley's patch for problem with c() applied to ordered.
+ * Changed debian/rules to delete the .in files for autoconf from the
+ package
+
+ * Changed priority to "optional"
+ * Modified to use pristine original sources.
+
+ -- Douglas Bates <bates@stat.wisc.edu> Sun, 4 Jan 1998 14:54:04 -0600
+
+r-base (0.61.0-2) unstable; urgency=low
+
+ * Modified the format of the orig.tar.gz file
+
+ -- Douglas Bates <bates@stat.wisc.edu> Tue, 23 Dec 1997 12:02:09 -0600
+
+r-base (0.61.0-1) unstable; urgency=low
+
+ * Initial release
+
+ -- Douglas Bates <bates@stat.wisc.edu> Tue, 23 Dec 1997 10:01:21 -0600
+
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..7f8f011
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+7
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..bc3c672
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,375 @@
+Source: r-base
+Section: gnu-r
+Priority: optional
+Maintainer: Dirk Eddelbuettel <edd@debian.org>
+Standards-Version: 3.9.8
+Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386], mpack, bash-completion
+Homepage: http://www.r-project.org/
+
+Package: r-base
+Architecture: all
+Depends: ${misc:Depends}, r-base-core (>= ${source:Version}), r-recommended (= ${source:Version})
+Recommends: r-base-html, r-doc-html
+Suggests: ess, r-doc-info | r-doc-pdf
+Description: GNU R statistical computation and graphics system
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package is a metapackage which eases the transition from the
+ pre-1.5.0 package setup with its larger r-base package. Once installed, it
+ can be safely removed and apt-get will automatically upgrade its components
+ during future upgrades. Providing this package gives a way to users to
+ then only install r-base-core if they so desire.
+
+Package: r-base-core
+Architecture: any
+Depends: ${misc:Depends}, ${perl:Depends}, zip, unzip, libpaper-utils, xdg-utils, ${shlibs:Depends}, ucf (>= 3.0), ca-certificates
+Replaces: r-base (<= 1.4.1-1), r-recommended (<< 1.9.0), r-gnome (<= 2.3.1), r-cran-rcompgen (<= 0.1-17-1), r-base-latex (<= 2.9.2-4)
+Provides: r-gnome, r-cran-rcompgen, r-base-latex, r-api-3
+Conflicts: r-gnome, r-cran-rcompgen, r-base-latex
+Recommends: r-recommended, r-base-dev, r-doc-html
+Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
+Description: GNU R core of statistical computation and graphics system
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available
+ from CRAN, the Comprehensive R Archive Network, many also as Debian
+ packages, named 'r-cran-<name>'.
+ .
+ This package provides the core GNU R system from which only the optional
+ documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
+ have been split off to somewhat reduce the size of this package.
+
+Package: r-base-dev
+Architecture: all
+Depends: ${misc:Depends}, r-base-core (>= ${source:Version}), build-essential, gcc, g++, gfortran, libblas-dev | libatlas-base-dev, liblapack-dev | libatlas-base-dev, libncurses5-dev, libreadline-dev, libjpeg-dev, libpcre3-dev, libpng-dev, zlib1g-dev, libbz2-dev, liblzma-dev, libicu-dev, cdbs, xauth, pkg-config
+Suggests: debhelper, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, texinfo
+Description: GNU R installation of auxiliary GNU R packages
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package ensures that other Debian packages needed for installation of
+ some auxiliary R packages are installed.
+
+Package: r-mathlib
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Recommends: r-base-core (= ${binary:Version}), r-base-dev (= ${binary:Version})
+Description: GNU R standalone mathematics library
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package provides the libRmath shared and static libraries which can
+ be called from standalone C or C++ code.
+
+Package: r-base-html
+Architecture: all
+Priority: extra
+Section: doc
+Depends: ${misc:Depends}, r-base-core
+Replaces: r-base (<= 1.4.1-1), r-recommended (<< 1.9.0)
+Suggests: r-doc-html, mozilla | www-browser
+Description: GNU R html docs for statistical computing system functions
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package provides html documentation suitable for browsing with a
+ web-browser for the libraries included in the r-base package. It is not
+ a required package as the same documentation is already included for
+ on-line browsing.
+
+Package: r-doc-pdf
+Architecture: all
+Section: doc
+Depends: ${misc:Depends}
+Suggests: r-base-core, xdg-utils | pdf-viewer
+Description: GNU R pdf manuals for statistical computing system
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package provides the R manuals in pdf format. The sibling packages
+ r-doc-html and r-doc-info provides the same manuals.
+
+Package: r-doc-html
+Architecture: all
+Section: doc
+Depends: ${misc:Depends}
+Suggests: r-base-core, mozilla | www-browser
+Replaces: r-base (<= 1.4.1-1)
+Description: GNU R html manuals for statistical computing system
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package provides the R manuals in html format. The sibling packages
+ r-doc-pdf and r-doc-info provides the same manuals.
+
+Package: r-doc-info
+Architecture: all
+Section: doc
+Depends: ${misc:Depends}, dpkg (>= 1.15.4) | install-info
+Replaces: r-base (<= 1.4.1-1)
+Suggests: r-base-core, info (>= 3.12) | info-browser
+Description: GNU R info manuals statistical computing system
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package provides the R manuals in info format. The sibling packages
+ r-doc-html and r-doc-pdf provide the same manuals.
+
+Package: r-recommended
+Architecture: all
+Depends: ${misc:Depends}, r-base-core (>= ${binary:Version}), r-cran-boot (>= 1.2.19), r-cran-cluster (>= 1.9.6-2), r-cran-foreign (>= 0.7-2), r-cran-kernsmooth (>= 2.2.14), r-cran-lattice (>= 0.10.11), r-cran-mgcv (>= 1.1.5), r-cran-nlme (>= 3.1.52), r-cran-rpart (>= 3.1.20), r-cran-survival (>= 2.13.2-1), r-cran-mass, r-cran-class, r-cran-nnet, r-cran-spatial, r-cran-codetools, r-cran-matrix
+Description: GNU R collection of recommended packages [metapackage]
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This Debian package is now a metapackage that depends on a set of
+ packages that are recommended by the upstream R core team as part of a
+ complete R distribution, and distributed along with the source of R
+ itself, as well as directly via the CRAN network of mirrors. This set
+ comprises the following packages (listed in their upstream names):
+ - KernSmooth: Functions for kernel smoothing for Wand & Jones (1995)
+ - Matrix: Classes and methods for dense and sparse matrices and
+ operations on them using Lapack and SuiteSparse
+ - MASS, class, nnet and spatial: packages from Venables and Ripley,
+ `Modern Applied Statistics with S' (4th edition).
+ - boot: Bootstrap R (S-Plus) Functions from the book "Bootstrap Methods
+ and Their Applications" by A.C. Davison and D.V. Hinkley (1997).
+ - cluster: Functions for clustering (by Rousseeuw et al.)
+ - codetools: Code analysis tools for R
+ - foreign: Read data stored by Minitab, S, SAS, SPSS, Stata, ...
+ - lattice: Implementation of Trellis (R) graphics
+ - mgcv: Multiple smoothing parameter estimation and GAMs by GCV
+ - nlme: Linear and nonlinear mixed effects models
+ - rpart: Recursive partitioning and regression trees
+ - survival: Survival analysis, including penalised likelihood.
+
+
+Package: r-base-core-dbg
+Priority: extra
+Section: debug
+Architecture: any
+Depends: ${misc:Depends}, r-base-core (= ${binary:Version}), r-base-dev (= ${source:Version})
+Description: GNU R debug symbols for statistical comp. language and environment
+ R is a system for statistical computation and graphics. It consists
+ of a language plus a run-time environment with graphics, a debugger,
+ access to certain system functions, and the ability to run programs
+ stored in script files.
+ .
+ The design of R has been heavily influenced by two existing languages:
+ Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
+ resulting language is very similar in appearance to S, the underlying
+ implementation and semantics are derived from Scheme.
+ .
+ The core of R is an interpreted computer language which allows
+ branching and looping as well as modular programming using functions.
+ Most of the user-visible functions in R are written in R. It is
+ possible for the user to interface to procedures written in the
+ C, C++, or FORTRAN languages for efficiency, and many of R's core
+ functions do so. The R distribution contains functionality for a
+ large number of statistical procedures and underlying applied math
+ computations. There is also a large set of functions which provide
+ a flexible graphical environment for creating various kinds of data
+ presentations.
+ .
+ Additionally, several thousand extension "packages" are available from
+ CRAN, the Comprehensive R Archive Network, many also as Debian packages,
+ named 'r-cran-<name>'.
+ .
+ This package contains debugging symbol tables for the binaries and dynamic
+ libraries in the r-base-core package.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..51a35e9
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,660 @@
+This is the Debian GNU/Linux r-base package of the GNU R system for
+statistical computing and graphics.
+
+R has a home page at `http://www.r-project.org/'. It is free software
+distributed under a GNU-style copyleft, and an official part of the GNU
+project ("GNU S").
+
+This package was initially debianized by Douglas Bates bates@stat.wisc.edu on
+Wed, 10 Dec 1997 14:17:31 -0600.
+
+Dirk Eddelbuettel <edd@debian.org> currently maintaines the package.
+
+Sources were downloaded from http://cran.r-project.org/src/ and changes,
+typically only to files in the debian/ directory are fully documented in the
+file /usr/share/doc/r-base/changelog.Debian.gz.
+
+R was initially written by Robert Gentleman and Ross Ihaka of the
+Statistics Department of the University of Auckland.
+Since mid-1997 there has been a core group with write access to the R
+source, currently consisting of
+Douglas Bates <bates@stat.wisc.edu>
+John Chambers <jmc@R-project.org>
+Peter Dalgaard <p.dalgaard@biostat.ku.dk>
+Seth Falcon <sfalcon@fhcrc.org>
+Robert Gentleman <rgentlem@fhcrc.org>
+Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
+Stefano Iacus <stefano.iacus@unimi.it>
+Ross Ihaka <ihaka@stat.auckland.ac.nz>
+Friedrich Leisch <Friedrich.Leisch@tuwien.ac.at>
+Thomas Lumley <tlumley@u.washington.edu>
+Martin Maechler <maechler@stat.math.ethz.ch>
+Duncan Murdoch <murdoch@stats.uwo.ca>
+Paul Murrell <paul@stat.auckland.ac.nz>
+Martyn Plummer <plummer@iarc.fr>
+Brian Ripley <ripley@stats.ox.ac.uk>
+Deepayan Sarkar <deepayan@stat.wisc.edu>
+Duncan Temple Lang <duncan@wald.ucdavis.edu>
+Luke Tierney <luke@stat.uiowa.edu>
+Simon Urbanek <urbanek@research.att.com>
+plus Heiner Schwarte <h.schwarte@bluewin.ch> up to October 1999
+and Guido Masarotto <guido@hal.stat.unipd.it> up to June 2003.
+
+Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka
+Copyright (C) 1995 - 2008 The R Development Core Team
+Copyright (C) 1995 - 2008 The R Core Development Team
+Copyright (C) 2002 - 2008 The R Foundation
+
+As a rought breakdown between R Core members (and not excluding
+double-counting), we have for R 2.7.0 and the src/ directory
+
+ 1276 files with Copyright (C) The R Development Core Team
+ 338 files with Copyright (C) The R Core Development Team
+ 287 files with Copyright (C) Ross Ihaka
+ 215 files with Copyright (C) The R Foundation
+ 201 files with Copyright (C) Robert Gentleman
+ 33 files with Copyright (C) Brian D. Ripley
+ 29 files with Copyright (C) Guido Masarotto
+ 13 files with Copyright (C) Paul Murrell
+ 5 files with Copyright (C) Martin Maechler
+ 4 files with Copyright (C) Douglas M. Bates
+ 1 file with Copyright (C) Friedrich Leisch
+ 1 file with Copyright (C) Martyn Plummer
+ 1 file with Copyright (C) Deepayan Sarkar
+ 1 file with Copyright (C) Luke Tierney
+
+As for non-R Core members
+
+ 4 files with Copyright (C) Adrian Trapletti
+ 3 files with Copyright (C) Jose C. Pinheiro
+ 2 files with Copyright (C) Berwin A. Turlach
+
+License: GPL-2
+Portions License: LGPL
+Portions License: Artistic
+
+R ships with the following file doc/COPYRIGHTS and refers to doc/COPYING, a
+copy of the GPL-2.
+
+========= begin doc/COPYRIGHTS ==============================================
+
+COPYRIGHT STATUS
+
+The bulk of this code is copyright by members of or all of the R
+Development Core Team.
+
+See the file COPYING for the exact conditions under which you may
+redistribute it.
+
+The status of files used only in the Windows port is in file
+src/gnuwin32/COPYRIGHTS.win, which is appended to this file in binary
+Windows distributions.
+
+ ---------------------------------------------------
+
+The some of the public header files are distributed under the more
+permissive terms of the file COPYING.LIB. This applies only to the
+files
+
+src/include/R.h
+src/include/Rdefines.h
+src/include/Rgraphics.h
+src/include/Rinternals.h
+src/include/Rmath.h
+src/include/S.h
+src/include/R_ext/*.h
+
+From the announcement of the change (2001-Feb-05)
+
+ It came to our attention that some projects are interpreting GPL to
+ mean that compiling against the header files or linking against a
+ Windows import library brings the compiled code under the scope of
+ GPL. This would mean it would be impossible to distribute binary
+ versions of non-GPL packages with compiled code which called entry
+ points in the R executable or DLL, of which there are many on CRAN.
+
+ We encourage packages to be distributed under Open Source conditions,
+ but accept that this is not possible for some contributions. Our
+ intention is that export files and import libraries be `accessors'
+ under clause 5 of the LGPL, so that in most cases no (additional)
+ restrictions are imposed by compiling a package using the LGPL-ed
+ components of R.
+
+ To avoid any anomalies, the versions of the same files in R versions
+ 1.0.0 to 1.2.1 may also be used under LGPL or GPL.
+
+As from R 2.3.0 import libraries are no longer used under Windows, and
+as from R 2.4.0 fewer export files are used under AIX.
+
+
+Some contributed files are also covered by the Library General Public License.
+These include (see also below)
+
+src/library/stats/R/embed.R
+src/library/stats/src/PPsum.c
+
+ ---------------------------------------------------
+
+
+
+
+Some of the code contains different copyright statements. It is used
+here in accordance with the copyright conditions in that code.
+
+src/library/grDevices/inst/afm/*___.afm
+
+ Copyright (c) 1984 to 1992 Adobe Systems Incorporated.
+
+src/library/grDevices/inst/afm/MustRead.html
+src/library/grDevices/inst/afm/Courier*.afm
+src/library/grDevices/inst/afm/Helvetica*.afm
+src/library/grDevices/inst/afm/Times*.afm
+src/library/grDevices/inst/afm/Symbol.afm
+src/library/grDevices/inst/afm/ZapfDingbats.afm
+
+ Copyright (c) 1985, 1987, 1989, 1990, 1993, 1997 Adobe Systems
+ Incorporated. All Rights Reserved.
+
+src/library/grDevices/inst/afm/*l.afm
+
+ Copyright 1999 by (URW)++ Design & Development
+
+src/library/grDevices/inst/afm/CM_*.afm
+src/library/grDevices/inst/afm/cm*.afm
+
+ are derived from afms which are copyright by the American
+ Mathematical Society, but `the AMS does require that the
+ AMS copyright notice be removed from any derivative versions
+ of the fonts which have been altered in any way'.
+
+doc/html/search/*.java
+
+ Copyright (C), 1998 Thomas Baier
+or Copyright (C), 1998-2000, Thomas Baier, R Core Development Team
+
+doc/manual/R-intro.texi
+
+ Copyright (C) 1990 W. N. Venables
+ Copyright (C) 1992 W. N. Venables & D. M. Smith
+ Copyright (C) 1997 R. Gentleman & R. Ihaka
+ Copyright (C) 1997, 1998 M. Maechler
+
+share/texmf/upquote.sty
+
+ Copyright 2000 Michael A. Covington.
+ Copyright 2003 Michael A. Covington, Frank Mittelbach.
+
+src/library/graphics/R/mosaicplot.R
+
+ Copyright (C) 1998 John W. Emerson
+
+src/library/graphics/R/pairs.R
+
+ In part, Copyright 1999 Dr. Jens Oehlschlaegel-Akiyoshi
+
+src/library/graphics/R/polygon.R
+
+ Copyright (C) 2001 by Kevin Buhr <buhr@stat.wisc.edu>
+
+src/library/stats/R/bandwidths.R
+src/library/stats/src//bandwidths.c
+src/appl/maxcol.c
+
+ Copyright (C) various dates W. N. Venables and B. D. Ripley
+
+
+src/appl/interv.c : moved to API from code originally in
+ src/library/stats/src/bvalue.f, see
+ src/library/stats/COPYRIGHTS.modreg
+
+src/library/stats:
+
+ See the files src/library/stats/COPYRIGHTS.modreg and
+ src/library/stats/COPYRIGHTS.portsrc for further details
+
+
+src/library/stats/R/diffinv.R
+src/library/stats/R/embed.R
+src/library/stats/R/kernel.R
+src/library/stats/src/PPsum.c
+
+ Copyright (C) 1997-1999 Adrian Trapletti
+
+
+src/library/stats/src/carray.c, mburg.c, myw.c, qr.c
+
+ Copyright (C) 1999 Martyn Plummer
+
+
+src/library/stats/R/nls.R
+
+ In part, Copyright 1999-1999 Saikat DebRoy
+
+
+src/library/stats/R/nlsFunc.R
+src/library/stats/R/selfStart.R
+src/library/stats/R/zzModels.R
+
+ Copyright 1997,1999 Jose C. Pinheiro
+
+src/library/stats/src/Trunmed.c
+
+ In part Copyright (C) 1995 Berwin A. Turlach
+
+src/library/tcltk/exec/*.tcl
+
+ Copyright (c) various dates Jeffrey Hobbs
+
+
+src/modules/X11/rotated.[ch]
+
+ Copyright (c) 1993 Alan Richardson
+
+
+src/appl/loglin.c
+src/library/stats/src/chisqsim.c
+src/library/stats/src/nscor.c
+src/library/stats/src/prho.c
+src/library/stats/src/swilk.c
+src/library/stats/src/kmns.f
+src/library/ts/src/starma.c
+src/nmath/pgamma.c
+src/nmath/pnbeta.c
+src/nmath/pnchisq.c
+src/nmath/pnt.c
+src/nmath/qbeta.c
+src/nmath/qgamma.c
+src/nmath/qnorm.c
+src/nmath/qtukey.c
+src/nmath/sunif.c
+ are based in whole or in part on Applied Statistics algorithms
+ (C) Royal Statistical Society
+
+src/nmath/stirlerr.c
+src/nmath/dbinom.c
+src/nmath/dpois.c
+ are partly based on Clive Loader's (1999) work,
+ (C) 1999-2000 Lucent Technologies, Bell Laboratories.
+
+
+src/main/RNG.c
+
+ The Mersenne-Twister part is
+ Copyright (C) 1997, 1999 Makoto Matsumoto and Takuji Nishimura.
+
+
+src/main/xspline.c
+
+ * Copyright (c) 1985-1988 by Supoj Sutanthavibul
+ * Parts Copyright (c) 1989-2002 by Brian V. Smith
+ * Parts Copyright (c) 1991 by Paul King
+ * Parts Copyright (c) 1992 by James Tough
+ * Parts Copyright (c) 1998 by Georg Stemmer
+ * Parts Copyright (c) 1995 by C. Blanc and C. Schlick
+
+ * Any party obtaining a copy of these files is granted, free of charge, a
+ * full and unrestricted irrevocable, world-wide, paid up, royalty-free,
+ * nonexclusive right and license to deal in this software and
+ * documentation files (the "Software"), including without limitation the
+ * rights to use, copy, modify, merge, publish and/or distribute copies of
+ * the Software, and to permit persons who receive copies from any such
+ * party to do so, with the only requirement being that this copyright
+ * notice remain intact.
+
+
+src/modules/lapack/dlapack[0123].f, cmplx.f, dlamc.f
+
+ Extracted from
+ * -- LAPACK routine (version 3.1) --
+ * Univ. of Tennessee, Univ. of California Berkeley, NAG Ltd.,
+ * Courant Institute, Argonne National Lab, and Rice University
+
+ The README says
+
+ It is freely-available software, and is copyrighted.
+
+ although no actual copyright statement appears in the code.
+
+
+src/main/vsnprintf.c
+
+ Taken from the wget 1.8.1 distribution: only used on platforms
+ without vsnprintf.
+ /*
+ * Copyright Patrick Powell 1995
+ * This code is based on code written by Patrick Powell (papowell@astart.com)
+ * It may be used for any purpose as long as this notice remains intact
+ * on all source code distributions
+ */
+
+
+src/main/regex.c
+ Copyright (C) 2002, 2003, 2004, 2005 Free Software Foundation, Inc.
+src/main/Rregex.h
+ Copyright (C) 1985,1989-93,1995-98,2000,2001,2002,2003
+ Free Software Foundation, Inc.
+
+
+src/extra/xdr/*
+
+ Copyright (undated) Sun Microsystems, Inc.
+
+ See the file src/extra/xdr/copyrght.txt
+
+
+src/extra/zlib/README, *.c, *.h
+
+ Taken from zlib-1.2.3 (C) 1995-2005 Jean-loup Gailly and Mark Adler
+ See src/extra/zlib/README for the licence.
+
+
+src/main/dounzip.c, unzip.h
+
+ Contains code Copyright (C) 1998 Gilles Vollant from contrib/minizip
+ in the zlib 1.1.3 distribution.
+
+
+src/main/acosh.c, asinh.c, atanh.c
+
+used as substitution code only. Based on
+
+ Cephes Math Library Release 2.8: June, 2000
+ Copyright 1984, 1995, 2000 by Stephen L. Moshier
+
+According to http://www.netlib.org/cephes/readme
+
+ What you see here may be used freely but it comes with no support or
+ guarantee.
+
+
+src/main/apse.c
+src/main/apse.h
+
+ Copyright (C) Jarkko Hietaniemi, 1998,1999,2000,2001.
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of either:
+
+ a) the GNU Library General Public License as published by the Free
+ Software Foundation; either version 2, or (at your option) any
+ later version, or
+
+ b) the "Artistic License" which comes with Perl source code.
+
+
+
+src/extra/pcre/LICENCE
+src/extra/pcre/*.[ch]
+
+ Copyright (c) 1997-2008 University of Cambridge
+ All rights reserved.
+
+See file src/extra/pcre/LICENCE. For binary builds of R that requires
+us to include
+
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+
+ * Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+
+ * Neither the name of the University of Cambridge nor the name of Google
+ Inc. nor the names of their contributors may be used to endorse or
+ promote products derived from this software without specific prior
+ written permission.
+
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
+
+
+src/extra/bzip2/LICENSE
+src/extra/bzip2/blocksort.c
+src/extra/bzip2/bzlib.c
+src/extra/bzip2/bzlib.h
+src/extra/bzip2/bzlib_private.h
+src/extra/bzip2/compress.c
+src/extra/bzip2/crctable.c
+src/extra/bzip2/decompress.c
+src/extra/bzip2/huffman.c
+src/extra/bzip2/randtable.c
+
+ copyright (C) 1996-2007 Julian R Seward.
+
+
+src/library/tools/src/md5.[ch]
+
+ Copyright (C) 1995, 1996, 2001 Free Software Foundation, Inc.
+
+
+src/extra/intl/*
+
+Based on gettextize from gettext 0.17
+ Copyright (C) various dates Free Software Foundation, Inc.
+ Distributed under the GNU Library General Public License
+ version 2 or later.
+
+src/include/memcheck.h
+src/include/valgrind.h
+
+From valgrind,
+
+ Copyright (C) 2000-2005 Julian Seward. All rights reserved.
+
+
+src/main/mkdtemp.c
+
+From glibc via
+http://lists.gnu.org/archive/html/bug-gnulib/2003-02/msg00019.html
+
+ Copyright (C) 1999, 2001-2003 Free Software Foundation, Inc.
+ Distributed under the GNU Library General Public License
+ version 2 or later.
+
+src/main/Rstrptime.c
+
+ Copyright (C) 1996, 1997, 1998, 1999, 2000 Free Software Foundation, Inc.
+ Distributed under the GNU Library General Public License
+ version 2 or later.
+
+share/perl/File/Copy/Recursive.pm
+
+ Copyright 2004 by Daniel Muey
+
+ This library is free software; you can redistribute it and/or modify
+ it under the same terms as Perl itself.
+
+
+share/perl/Text/Delimiter.pm
+
+ Copyright (C) Small Planet Software and Norman Walsh.
+ All rights reserved. This program is free software; you can
+ redistribute it and/or modify it under the same terms as Perl itself.
+
+po/*.po
+src/library/*/po/*.po
+
+ Some of the translations are (C) the translator as marked in the files.
+
+COPYING
+doc/COPYING
+doc/COPYING.LIB
+m4/codeset.m4
+m4/gettext.m4
+m4/gettext-lib.m4
+share/licenses/GPL-2
+share/licenses/GPL-3
+share/licenses/LGPL-2
+share/licenses/LGPL-2.1
+share/licenses/LGPL-3
+src/main/strdup.c
+tools/config.quess
+tools/config.rpath
+tools/config.sub
+tools/help2man.pl
+tools/ltmain.sh
+tools/mdate-sh
+tools/missing
+
+ Copyright various dates Free Software Foundation
+
+
+tools/install-sh:
+
+ Copyright (C) 1994 X Consortium
+
+
+========= end doc/COPYRIGHTS ================================================
+
+
+The windows32 port includes the following file src/gnuwin32/COPYRIGHTS.win
+========= begin src/gnuwin32/COPYRIGHTS.win =================================
+
+Windows version
+===============
+
+src/gnuwin32/e_pow.S
+
+is distributed under the Lesser GNU Public Licence (file COPYING.LIB),
+being based closely on code in the GNU C Library.
+
+
+src/gnuwin32/getline/*
+
+/*
+ * Copyright (C) 1991, 1992, 1993 by Chris Thewalt (thewalt@ce.berkeley.edu)
+ *
+ * Permission to use, copy, modify, and distribute this software
+ * for any purpose and without fee is hereby granted, provided
+ * that the above copyright notices appear in all copies and that both the
+ * copyright notice and this permission notice appear in supporting
+ * documentation. This software is provided "as is" without express or
+ * implied warranty.
+ *
+ * Thanks to the following people who have provided enhancements and fixes:
+ * Ron Ueberschaer, Christoph Keller, Scott Schwartz, Steven List,
+ * DaviD W. Sanderson, Goran Bostrom, Michael Gleason, Glenn Kasten,
+ * Edin Hodzic, Eric J Bivona, Kai Uwe Rommel, Danny Quah, Ulrich Betzler
+ */
+
+
+
+src/extra/graphapp/*
+src/gnuwin32/front-ends/graphappmain.c
+
+The files {arith, array, bitmap, buttons, context, controls, cursors,
+drawing, drawtext, events, fonts, image, init, menus, objects,
+strings, windows}.c, {graphapp, internal}.h are in part
+
+ Copyright (C) 1993-1998 Lachlan Patrick
+ Distributed under the GNU Library General Public License
+
+
+src/gnuwin32/psignal.[ch]
+
+Based on files which are
+ Freely redistributable and modifiable. Use at your own risk.
+ Copyright 1994-1999 The Downhill Project
+ http://www.ede.com/free/u2nt
+
+
+src/gnuwin32/front-ends/SC_*.h, bdx*.[ch], com_util.[ch], rproxy*.[ch]
+
+ Copyright (C) 1999-2005 Thomas Baier
+ Distributed under the GNU Library General Public License
+ version 2 or later.
+
+
+
+R_HOME/Tcl:
+
+Files compiled and installed from Tcl 8.4.15 and Tk 8.4.15.
+see R_HOME/Tcl/license.terms for the license.
+
+ This software is copyrighted by the Regents of the University of
+ California, Sun Microsystems, Inc., and other parties. [...]
+
+
+src/extra/trio/* (except compat.c)
+
+From trio-1.12 (http://daniel.haxx.se/projects/trio/)
+
+ Copyright (C) 1998-2001 by Bjorn Reese and Daniel Stenberg.
+
+ Permission to use, copy, modify, and distribute this software for any
+ purpose with or without fee is hereby granted, provided that the above
+ copyright notice and this permission notice appear in all copies.
+
+ THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR IMPLIED
+ WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
+ MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE AUTHORS AND
+ CONTRIBUTORS ACCEPT NO RESPONSIBILITY IN ANY CONCEIVABLE MANNER.
+
+
+src/gnuwin32/dos_glob.[ch]
+
+Modified from perl's ext/File/Glob/bsd_glob.[ch].
+
+/*
+ * Copyright (c) 1989, 1993
+ * The Regents of the University of California. All rights reserved.
+ *
+ * This code is derived from software contributed to Berkeley by
+ * Guido van Rossum.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ * notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ * notice, this list of conditions and the following disclaimer in the
+ * documentation and/or other materials provided with the distribution.
+ * 3. Neither the name of the University nor the names of its contributors
+ * may be used to endorse or promote products derived from this software
+ * without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND
+ * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE
+ * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
+ * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+ * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
+ * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+ * SUCH DAMAGE.
+ */
+
+src/fixed/h/iconv.h
+
+From GNU libiconv-1.11, distributed under LGPL>=2,
+Copyright (C) 1999-2003, 2005-2006 Free Software Foundation, Inc.
+========= end src/gnuwin32/COPYRIGHTS.win ===================================
+
+
+
+On a Debian GNU/Linux system, the GPL licenses (version 2 and 3) are
+included in the files
+ /usr/share/common-licenses/GPL-2 and
+ /usr/share/common-licenses/GPL-3.
+The LGPL licenses are included in the files
+ /usr/share/common-licenses/LGPL-2,
+ /usr/share/common-licenses/LGPL-2.1 and
+ /usr/share/common-licenses/LGPL-3
+The Artistic license is in
+ /usr/share/common-licenses/Artistic.
+
diff --git a/debian/icon-class-patch/R.desktop b/debian/icon-class-patch/R.desktop
new file mode 100644
index 0000000..e044d3d
--- /dev/null
+++ b/debian/icon-class-patch/R.desktop
@@ -0,0 +1,10 @@
+[Desktop Entry]
+Version=1.0
+Type=Application
+Name=R
+Comment=R software environment for statistical computing and graphics
+Exec=R
+Icon=rlogo_icon
+Terminal=true
+StartupNotify=false
+Categories=Graphics;Science;Math;
diff --git a/debian/icon-class-patch/philip_johnson_email.txt b/debian/icon-class-patch/philip_johnson_email.txt
new file mode 100644
index 0000000..5cd5191
--- /dev/null
+++ b/debian/icon-class-patch/philip_johnson_email.txt
@@ -0,0 +1,149 @@
+From: Philip Johnson <plfjohnson@emory.edu>
+To: Dirk Eddelbuettel <edd@debian.org>
+Subject: Re: [Rd] x11 icon and class
+Date: Thu, 21 Jun 2012 17:30:50 -0500
+
+Hi Dirk,
+
+On 06/21/2012 06:53 AM, Dirk Eddelbuettel wrote:
+> Could I lean on you one last time to recap things today as R 2.15.1 will come
+> out tomorrow morning? That would be the time for the proper patch.
+
+I attach three files, just so you have everything in one email:
+1) the newer (second) version of the patch
+2) the icon (install to /usr/share/icons/hicolor/48x48/apps)
+3) the R.desktop file (install to /usr/share/applications)
+
+> So I successfully used your first patch (which needed no work whatsoever). I
+> think there was just one small addition, plus a .desktop file. I am a little
+> fuzzy about what to put in an R .desktop file as there is so much one could
+> list for eg mimetypes --- the one for GGobi is below.
+
+I would suggest a .desktop file for R similar to attached (also pasted
+below in the body of this email); if demand or a need arises later for
+more information, you can always add it in a later release. This
+includes all required items (Type, Name, Exec, etc.) plus some
+optional-but-nice (Terminal, StartupNotify, Categories, etc.).
+
+Crucially, for the .desktop file to work smoothly with Unity's
+application-matching framework, the WM_CLASS must match the executable
+name. So you'll need to apply the newer (second) version of the patch
+-- or just replace the following line in src/modules/X11/devX11.c:
+ chint->res_class = "R_x11";
+with
+ chint->res_class = "R";
+
+Hope this helps,
+Philip
+
+[Desktop Entry]
+Version=1.0
+Type=Application
+Name=R
+Comment=R software environment for statistical computing and graphics
+Exec=R
+Icon=rlogo_icon
+Terminal=true
+StartupNotify=false
+Categories=Graphics;Science;Math
+
+----------------------------------------------------------------------
+diff -Naur R-devel/src/modules/X11/devX11.c R-devel-patched/src/modules/X11/devX11.c
+--- R-devel/src/modules/X11/devX11.c 2012-05-28 20:53:33.000000000 -0400
++++ R-devel-patched/src/modules/X11/devX11.c 2012-06-18 10:36:47.447245038 -0400
+@@ -70,6 +70,7 @@
+ typedef int (*X11IOhandler)(Display *);
+
+ #include "devX11.h"
++#include "rlogo_icon.h" /* hard-coded ARGB icon */
+
+ #include <Rmodules/RX11.h>
+
+@@ -1580,17 +1581,24 @@
+
+ XStoreName(display, xd->window, xd->title);
+
+-#ifndef USE_Xt
+ /* For those too idle to make use of Xt (PR#14588) */
++ /* Not sure reason for above comment -- even with Xt, WM_CLASS
++ is not set on xd->window */
+ XClassHint *chint;
+ chint = XAllocClassHint();
+ if (chint) {
+- chint->res_name = "r_x11";
+- chint->res_class = "R_x11";
++ chint->res_name = "graphics";
++ chint->res_class = "R";
+ XSetClassHint(display, xd->window, chint);
+ XFree(chint);
+ }
+-#endif
++
++ /* set window icon -- hardcoded into rlogo_icon.h */
++ XChangeProperty(display, xd->window,
++ XInternAtom(display, "_NET_WM_ICON", False),
++ XInternAtom(display, "CARDINAL", False), 32,
++ PropModeReplace,
++ (const unsigned char*) rlogo_icon, 2 + 48*48);
+
+ /* set up protocols so that window manager sends */
+ /* me an event when user "destroys" window */
+diff -Naur R-devel/src/modules/X11/rlogo_icon.h R-devel-patched/src/modules/X11/rlogo_icon.h
+--- R-devel/src/modules/X11/rlogo_icon.h 1969-12-31 19:00:00.000000000 -0500
++++ R-devel-patched/src/modules/X11/rlogo_icon.h 2012-06-07 14:54:07.219041708 -0400
+@@ -0,0 +1,51 @@
++unsigned long rlogo_icon[] = {
++ 48,48,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1868983,0x27e837a,0x6959595,0x2a888b85,0x5881857f,0x7d7f827b,0x9b7e827a,0xb17c8078,0xc07c7f78,0xc97c8179,0xca797e76,0xc3777c73,0xb4777b74,0x9d747971,0x8074786f,0x5b757870,0x2e797d75,0x77e847e,0x164685f,0x16b7168,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x38a8d88,0x68b8f89,0x288b8e89,0x71868983,0xba848881,0xf6838780,0xff838780,0xff838780,0xff848881,0xff848881,0xff848881,0xff848881,0xff858982,0xff81857e,0xff80847d,0xff7f837b,0xff7c8079,0xff787e76,0xff747a71,0xff71766d,0xf86f736b,0xbf6d7269,0x766c7169,0x2c70726c,0x7656a62,0x3666b63,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x58a8e87,0x1a8d918b,0x608a8f88,0xc9888c86,0xff878c85,0xff898d87,0xff8b8f89,0xff8c9089,0xfe8d918b,0xfe8f938d,0xff90948e,0xff91958e,0xff91968f,0xff91968f,0xff939891,0xff8f948d,0xff8f938c,0xff8d918b,0xff8a8f88,0xff878c85,0xfe858983,0xfe82867f,0xff7d8179,0xff777c73,0xff70756c,0xff6a6f66,0xcf676c63,0x65666c63,0x1d656a61,0x55f655b,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x290978c,0x208e918b,0x728c9089,0xe48a8f88,0xff8c918a,0xff90948d,0xff91958e,0xfe929690,0xff91958e,0xff8d918a,0xff8d9189,0xff8e938c,0xff92968f,0xff959992,0xff959a93,0xff959a93,0xff959a93,0xff949992,0xff939891,0xff939891,0xff929790,0xff91968f,0xff90948e,0xff8e938c,0xff8a8f88,0xff858a83,0xfe81857e,0xff7b8078,0xff737870,0xff696e65,0xe963685f,0x7a61675e,0x245f645b,0x3626660,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x1091948f,0x5a8f928c,0xd68e918a,0xff90948d,0xff969a93,0xfe979a94,0xfe939790,0xff878c84,0xff7b7f77,0xff7a7f77,0xff858983,0xff92968f,0xff9b9f99,0xff9da19b,0xff999e97,0xff91958f,0xfe888c84,0xff7e827b,0xff767a73,0xff70756d,0xff6d726a,0xff6c7068,0xff6d7169,0xff6f746b,0xff72776f,0xff777c74,0xff7c8179,0xfe81867f,0xfe848881,0xfe82857f,0xfe7b8079,0xff72776f,0xff656a62,0xdd5e635a,0x605b6058,0x135b6057,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x2792968f,0x9790938d,0xff91948f,0xff9a9e97,0xfe9da19b,0xfe959992,0xff7e837b,0xff6f746c,0xff7c8078,0xff949791,0xffa8aca6,0xffb4b7b2,0xffafb2ad,0xfe999d97,0xff81857e,0xff6e726b,0xff5d6259,0xff53584f,0xfc4b4f47,0xf2464b43,0xea454941,0xe4454941,0xe1444941,0xe0474c44,0xe34b5048,0xe84f544c,0xf052574e,0xfa555a51,0xff5a6057,0xff62685e,0xff6e736b,0xff7a7e77,0xfe7d827a,0xfe797e75,0xff6d7169,0xff5d625a,0xa0575c53,0x2d54594f,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x3791958f,0xbf91958e,0xff969993,0xffa5a9a3,0xfea0a49e,0xff848881,0xff6a6f67,0xff7b8078,0xff9ea29b,0xffbabdb8,0xffc6c9c4,0xfeb5b8b3,0xfe949892,0xff737770,0xff535850,0xf93e423a,0xdc30342d,0xf150534e,0xde52544f,0xf8767874,0xdf7f817d,0xca888a86,0xbb8f918d,0xb4929591,0xb3949692,0xba929490,0xc68e918c,0xda8a8c88,0xec82847f,0xe871756e,0xeb686d65,0xeb5c6159,0xf2545950,0xff61665e,0xff72766e,0xff797e76,0xff71766e,0xff5e635b,0xc853584f,0x3f4e534b,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x37949892,0xcf92968f,0xff999d96,0xfeafb2ad,0xfe9a9e97,0xff72776f,0xff6d7169,0xff979b95,0xffbfc2be,0xffd1d3d0,0xfec0c2be,0xfe979c95,0xff6c7069,0xff434740,0xdf252922,0xe14a4d48,0xf180817d,0xc0999b96,0xe6d7d7d5,0xc3fbfbfa,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xf5ffffff,0xd5ffffff,0xdbe2e3e1,0xdebdbfbb,0xdf949892,0xe8787c76,0xe85b6057,0xfa5f645b,0xff72776f,0xfe737870,0xff60655c,0xd94f544b,0x3f4a4f47,0x0,0x0,0x0,
++ 0x0,0x0,0x21959993,0xcb949791,0xff9a9e97,0xfeb8bbb6,0xff939690,0xff666b63,0xff787d75,0xffaeb1ac,0xffd5d7d4,0xffd4d6d3,0xfeaeb1ac,0xff797d76,0xff42463f,0xf331352e,0xeb61635f,0xd0969895,0xc5cbced2,0xf4eef1f7,0xffeef1f7,0xfceaedf2,0xffe7eaef,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfbe5e7ed,0xfee6e9ee,0xfde9ecf1,0xf1f4f5f9,0xd4ffffff,0xd5f7f6f4,0xe8c4c5c1,0xe790938e,0xea62675f,0xfe696f66,0xff73776f,0xff5d625a,0xd4494e46,0x29494d45,0x0,0x0,
++ 0x0,0x4989e98,0xa7939791,0xff989c96,0xfebbbeb9,0xff979a94,0xff60655c,0xff7e827b,0xffbabdb9,0xffe0e2df,0xffd3d5d2,0xfea0a49e,0xff5f645d,0xf8272b24,0xdb3a3e38,0xe3a1a3a1,0xebf0f0f0,0xffffffff,0xd9bcc5d8,0xf4a0acc7,0xfaa0acc7,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc9,0xf99daac5,0xec94a0b9,0xe397a1b7,0xd8b3b8c7,0xcef1f2f7,0xe5fdfdfc,0xd1c4c7c3,0xd37d827a,0xfe6c7068,0xff72776f,0xff565b53,0xb442473f,0x85c5f57,0x0,
++ 0x0,0x52959993,0xff969a93,0xffaeb2ad,0xfeabaea9,0xff5e625a,0xff7b7f78,0xffbabdb8,0xffe7e8e6,0xffd6d7d4,0xfe9ea19c,0xff525750,0xec1a1e17,0xce555753,0xd7d6d6d5,0xf7ffffff,0xffffffff,0xffffffff,0xcf929eb8,0xf79babcd,0xff7a86a2,0xff6a748d,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a748d,0xff69758e,0xff6c7894,0xff7785a4,0xe96d7b9d,0xd76d7790,0xcfb6bac5,0xe5ffffff,0xebefefee,0xb2949791,0xf16d7269,0xff70756d,0xff474c44,0x6140443d,0x0,
++ 0x1b0a7b6,0xd2949891,0xff9ca09a,0xfec5c7c3,0xff656961,0xff6e736a,0xffaaada8,0xffe9eae8,0xffe0e2e0,0xfea9ada7,0xff565a52,0xeb181c16,0xbf565955,0xd7ededed,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b8,0xf6a7b6d9,0xff5b657b,0xff6d7a96,0xff707c9a,0xff707c9a,0xff6f7c99,0xff6c7997,0xff6c7997,0xff6d7a98,0xff6d7a98,0xff6d7a98,0xff6d7a97,0xff6d7a98,0xff6e7a98,0xff6e7b99,0xff6d7b98,0xfe6a7692,0xfe5f6a83,0xff606b83,0xff677490,0xee58637c,0xc9a5a9b4,0xf8fdfdfe,0xdffcfcfc,0xaea9ada7,0xf7767b72,0xff646961,0xde393d36,0x65e6358,
++ 0x39959992,0xff949892,0xffadb0ab,0xff9b9e99,0xff5a5e56,0xff90938d,0xffd8d9d7,0xffefefee,0xffc1c3bf,0xff6e726b,0xf821241e,0xd5525451,0xd9eeefee,0xfcffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff545d73,0xff7f91b6,0xff8495bc,0xff8395bc,0xff8496bc,0xffabbada,0xffaab9dc,0xffa5b5d9,0xffa5b5d9,0xffa5b5d9,0xffa7b6da,0xffa5b4d8,0xff9babcf,0xff90a1c5,0xff8798be,0xff7e8fb5,0xff7786aa,0xfe6f7d9c,0xfe636f89,0xff5b6781,0xea454e63,0xe4d1d3d7,0xffffffff,0xe9ffffff,0xb39fa29c,0xfd7a7f77,0xff42473f,0x473a3d35,
++ 0x8292968f,0xff969a94,0xfebdc0bc,0xff62675e,0xff70756d,0xffb0b3ad,0xfff1f1f0,0xffdfe1de,0xfe9ca09a,0xff393d36,0xea3b3d39,0xdecacac9,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8192b8,0xff8597be,0xff8496be,0xfea4b4d6,0xff8e9cb9,0xff5e6880,0xff5d6880,0xff5d6880,0xff5d6880,0xff5d677f,0xff5c677f,0xff68748e,0xfe7b89a7,0xff8291b2,0xff8495ba,0xff8799c1,0xff8496bd,0xff7887a9,0xfe677490,0xff424c62,0xd3797d88,0xf4f2f2f3,0xffffffff,0xeefcfcfc,0xce82867f,0xff5e635b,0x9430342e,
++ 0xb590948d,0xff969a93,0xffafb2ad,0xff53584f,0xff82867e,0xffcaccc8,0xfff4f5f4,0xffcbcdc9,0xff777b74,0xf320241d,0xe9787a76,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff95a4c4,0xfe474f64,0xf31b1e26,0xcb222632,0xcd222632,0xcd222632,0xcc212531,0xcd222633,0xe9343b4b,0xff515c74,0xfe6f7b99,0xfe7886a5,0xff8294b9,0xff8597bf,0xff8597bf,0xfe7a89a9,0xff545f78,0xd3303745,0xf4e2e3e4,0xffffffff,0xffffffff,0xd0cccdca,0xff7a7e77,0xc62d312a,
++ 0xcf8e928b,0xff949892,0xff9b9e98,0xff585d54,0xff8d928a,0xffd8d9d7,0xfff0f1f0,0xffbcbfba,0xff5b5f57,0xeb31342e,0xe0abacab,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8895b4,0xfc3f475b,0xc7383a40,0xfcf7f7f7,0xf9efefef,0xf9efefef,0xf9efefef,0xfdf0f0f1,0xd3e0e1e4,0xaf6d778c,0xff717e9d,0xfe7783a0,0xff7080a1,0xff8699c0,0xff8597bf,0xff8596b9,0xff616d88,0xf2282e3b,0xfbdbdbdc,0xffffffff,0xffffffff,0xc8fcfcfc,0xfa8b8f88,0xdf2f332d,
++ 0xce8a8e88,0xff91958f,0xff8b8f89,0xff5b5f57,0xff90958e,0xffdbdddb,0xffedeeed,0xffb5b8b3,0xff4f544c,0xf74b4e49,0xf3cccdcd,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfeffffff,0xe3cfd4dd,0xdc8091b3,0xff7a87a2,0xff6a7896,0xff8799c1,0xff8496be,0xff8e9ec2,0xfe67748f,0xff222734,0xffd7d7d9,0xfeffffff,0xffffffff,0xfdffffff,0xde949992,0xdf31352f,
++ 0xb4878b85,0xff8d918b,0xff8a8e87,0xff5b6057,0xff8d908a,0xffd5d7d5,0xffecedec,0xffb5b8b3,0xff535851,0xf74e524d,0xf2d0d1cf,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xe6d6dae4,0xd88f9fc4,0xff7e8aa4,0xff657290,0xff8799c1,0xff8396bd,0xff95a6c9,0xff646f89,0xf01a1e28,0xfbd8d8d9,0xffffffff,0xfefefefe,0xffffffff,0xdc969a94,0xc5292d27,
++ 0x83858982,0xff878c85,0xfe8a8e87,0xff5d625a,0xff82857f,0xffc4c6c3,0xffecedeb,0xffbdbfba,0xff6a6e67,0xe93e423c,0xdeb7b8b6,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc43d3f45,0xffffffff,0xfefefefe,0xfefefefe,0xfefefefe,0xfffefefe,0xf5fcfcfd,0xecc0c9dc,0xfd9daed1,0xff818ba1,0xff5f6c8a,0xff889ac2,0xff8899c0,0xfe9dacd0,0xff535c72,0xcb0f1119,0xf2dfdfdf,0xffffffff,0xffffffff,0xc7ffffff,0xf78a8e88,0x9321241f,
++ 0x37848881,0xff80847d,0xff888c85,0xff6b7068,0xff737870,0xffaaada8,0xffe6e7e5,0xffcbceca,0xff898d86,0xef343931,0xe58e8f8c,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff808ead,0xfd495268,0xe54f5668,0xfebcc4d5,0xf9bac0d2,0xfab9c0d2,0xfbbac1d2,0xeeb5bdcf,0xd894a3c1,0xf899abcf,0xff99a5ba,0xfe636e81,0xff7686ab,0xff8597bf,0xfea5b6d8,0xff8c9ab8,0xff292e3c,0xc0525356,0xf0f0f0f0,0xffffffff,0xffffffff,0xcadedfdd,0xf8626660,0x47272926,
++ 0x0,0xd27c8078,0xff81857e,0xfe7c817a,0xff696e66,0xff8e928b,0xffcbcdca,0xffd9dad8,0xfea7aba5,0xff5a5f56,0xe65b5f58,0xdbdfdfde,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xfe7786a5,0xff6c7893,0xff7d8cab,0xff808eb1,0xff8190b2,0xff8090b2,0xff8090b1,0xff8493b5,0xff9eaecd,0xffa0adc1,0xfe5d6573,0xff657390,0xff90a2c8,0xfeaabad8,0xffa5b4d0,0xff4a5265,0xe90c0d12,0xd4c5c4c5,0xf7ffffff,0xffffffff,0xf8ffffff,0xbd9a9e98,0xd8333732,0x3676868,
++ 0x0,0x51797d76,0xff787d75,0xff81857e,0xfe73776f,0xff787d75,0xffa3a5a0,0xffd4d6d3,0xffc1c4c0,0xff8e928b,0xf3464b42,0xcd7d807b,0xe0fcfdfc,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff8294ba,0xff58647d,0xff596276,0xff5d657a,0xff5e677b,0xff5e677b,0xff5f677c,0xff5e667a,0xff4e5667,0xff525a6c,0xfe8f9db8,0xfeacbcdc,0xffacbad6,0xff8390aa,0xfe3a4153,0xfa16181c,0xad7e7e7f,0xe9fbfbfb,0xffffffff,0xffffffff,0xa1c4c6c2,0xf5646762,0x6121221f,0x0,
++ 0x0,0x0,0xae747870,0xff787c74,0xff7d817a,0xfe747871,0xff848880,0xffacafaa,0xffc9ccc7,0xfeb1b5af,0xff7f847d,0xe4484d45,0xd29c9f9b,0xeefcfcfc,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff8597be,0xff92a3c9,0xff8b9bc0,0xff8797bb,0xff8697bb,0xff8394b8,0xff8090b5,0xff7c8eb3,0xff91a2c6,0xfea8b6d4,0xff707c95,0xff4b5469,0xfa353b4d,0xf01e212b,0xe3252527,0xcaa2a2a2,0xf5ffffff,0xffffffff,0xf2ffffff,0xeae4e6e4,0xf8828680,0xba282b27,0x3515154,0x0,
++ 0x0,0x0,0x1a73796f,0xd36f736b,0xff757a72,0xfe7b7e77,0xfe797d75,0xff898d86,0xffabaea9,0xffbbbeba,0xfea8aca6,0xff7e827b,0xec575c54,0xc6939791,0xdff0f0ef,0xfdffffff,0xffffffff,0xffffffff,0xcf93a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xfe92a3c8,0xffabbad6,0xff97a5c3,0xff94a1bf,0xff93a1bf,0xff8f9dbd,0xfe8c9cbe,0xff8698bc,0xff8e9fc3,0xff68748d,0xfe242937,0xfa2b2e37,0xd23c3e43,0xb9868786,0xccf3f3f3,0xf8ffffff,0xffffffff,0xf0f9faf9,0xc6d6d7d4,0xee7e817b,0xd8333731,0x23272a27,0x0,0x0,
++ 0x0,0x0,0x0,0x326d7069,0xd66a6f67,0xff70756d,0xff787d75,0xfe7d817a,0xff8a8e87,0xffa3a6a1,0xffafb2ac,0xfea2a69f,0xff848881,0xef5c6158,0xd9858882,0xe5d2d3d1,0xedfafaf9,0xffffffff,0xd095a1ba,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xffa3b3d3,0xfe66728b,0xfb2f3544,0xeb31384a,0xee333b4d,0xfc495369,0xff697693,0xfe7c8ba9,0xff7988a8,0xff626e88,0xfe616c86,0xef8490ab,0xcda5aec3,0xdbd5d8e1,0xf3fbfbfd,0xeaffffff,0xedededec,0xcbb7bab5,0xfd757972,0xde3a3d39,0x3d1f211e,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x36696e66,0xc5656a62,0xff6a6f67,0xff737870,0xfe7c8079,0xff888b84,0xff999c96,0xffa2a6a0,0xfe9ca09a,0xff8b8f88,0xff6d7169,0xe76c7068,0xda9fa39d,0xe9dadad6,0xd18a97af,0xf7a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496be,0xff8b9ab9,0xfd3b4255,0xdd212227,0xdd929397,0xdc8a8b90,0xdd747984,0xf95d6880,0xff6e7c9a,0xfe707d9a,0xfe697591,0xff6c7892,0xff6c7894,0xff687493,0xeb5d6985,0xd4969ba6,0xd4c2c4c1,0xda8c9089,0xff61655e,0xcd333731,0x401d1f1b,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x26636960,0xa160665d,0xf6646960,0xff6a6f67,0xff767a72,0xfe81857d,0xff8e928b,0xff999c96,0xfe989c95,0xfe90948d,0xff81857d,0xfe6c7068,0xe8777a70,0xea727e92,0xfca5b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8694b3,0xfc40475c,0xbe404249,0xffffffff,0xffffffff,0xdfffffff,0xd9a7adba,0xf462708e,0xff7b88a6,0xff687592,0xff687593,0xfe636e89,0xfe6b7791,0xff606c87,0xf94a5367,0xff5c6161,0xfb51544e,0xa9262924,0x2c171a15,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0xd63685f,0x695d6258,0xc95d6259,0xff60655d,0xff686d65,0xff737870,0xfe80837c,0xff8b8f88,0xff91958e,0xfe91968f,0xff8d918b,0xff84877d,0xff747f90,0xffa5b4d6,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfd40475c,0xd0383a3f,0xd6dddedb,0xe8d8d9d7,0xb9cdceca,0xb5b0b3b3,0xe869748a,0xff717f9e,0xff7784a1,0xff7e8fb3,0xff8496bd,0xff7281a2,0xfe66738e,0xff515c74,0xff3d434f,0x7f252928,0xe121206,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x2d5b5f56,0x79585d54,0xcf585e55,0xff5a5f57,0xff61665e,0xff6b7068,0xff767b73,0xfe80847c,0xff878b84,0xff8c9087,0xff798497,0xffa5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40485c,0xf33c3f41,0xdf92968f,0xed959993,0xcd848881,0xe08d918a,0xf983898f,0xff6d7a98,0xff7784a1,0xff717f9e,0xff8698c0,0xff8799c1,0xff7584a4,0xff626e89,0xff495267,0x68505869,0x3dae3fe,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x366685c,0x2d535850,0x65535850,0xae535850,0xf352584f,0xff555a51,0xff5b6058,0xff636860,0xff6c7066,0xff6e7a8c,0xfea5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40485c,0xff3e4143,0xff898d85,0xff81857d,0xff7c8079,0xff72766e,0xff616662,0xff576071,0xff7380a0,0xfe7884a2,0xff7888ab,0xff8799c1,0xff8293b9,0xfe6d7a98,0xff56617a,0xe5495264,0x2f565b6a,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1b4f544c,0x374c5149,0x664e524a,0xa04d5249,0xd54c5249,0xff4b4e44,0xff5f6a7c,0xffa4b3d5,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40475b,0xff2a2d2e,0xff51554c,0xff484c44,0xff41453e,0xff3c4039,0xd5363b33,0xc1444c53,0xf26e7b99,0xff74819e,0xff7482a1,0xff8496bd,0xff8698c0,0xff7a8aac,0xff677490,0xff4b556b,0x9d4e5566,0xe555b67,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x35b5f58,0x14494e46,0x22464b43,0x2534351d,0xb86d7b97,0xfba6b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40475b,0xde23262a,0x833d4038,0x6d3a3d37,0x4d393d36,0x3032352e,0x2026291f,0x29585f68,0xa2697591,0xff717f9e,0xfe7684a1,0xff7686a8,0xff8699c0,0xff8597be,0xfe6f7d9b,0xff5f6b85,0xff474f63,0x4b575d6c,0x2c9cccc,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a5,0xfaa7b6d9,0xff535c72,0xff7e90b6,0xff8295bc,0xff8294bc,0xff8593b2,0xfd40485c,0xb6292b32,0x28c8941,0x6434641,0x0,0x0,0x0,0x0,0x4d67728c,0xee6e7b97,0xff727f9c,0xfe7582a1,0xff8192b8,0xff8396be,0xff7e8fb3,0xfe687490,0xff4f5a72,0xd14a5264,0x14525869,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a4,0xfaa7b6d9,0xff717d97,0xffa5b5d7,0xffabbadd,0xffabbadd,0xff9faecd,0xfd40475c,0xb22a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0xe9099aa,0x9766728e,0xff727f9e,0xfe8492b0,0xff9aa8ca,0xffadbcdf,0xffacbbde,0xfe9eadcc,0xff7f8ca8,0xff4a5369,0x76545b69,0x6616670,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa37a8bac,0xfc72809c,0xff515b72,0xff515a71,0xff515b72,0xff515b72,0xff505a71,0xfe3a4255,0xb32a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x486c7690,0xe267738f,0xff56627b,0xff4c566b,0xff4e586e,0xff4e586e,0xff4e576d,0xff4d576c,0xff465065,0xf9434c5d,0x27616977,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x7e697289,0xcc393d48,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd931353e,0x983d4047,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x8ddebff,0x77525868,0xd4393d47,0xca2f323a,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xd0343741,0x7a5a606c,0x6686e7b,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++};
+
+----------------------------------------------------------------------
+PNG image [Press RETURN to save to a file]
+application/x-desktop [Press RETURN to save to a file]
diff --git a/debian/icon-class-patch/r_icon_class.patch b/debian/icon-class-patch/r_icon_class.patch
new file mode 100644
index 0000000..6fdeb80
--- /dev/null
+++ b/debian/icon-class-patch/r_icon_class.patch
@@ -0,0 +1,95 @@
+diff -Naur R-devel/src/modules/X11/devX11.c R-devel-patched/src/modules/X11/devX11.c
+--- R-devel/src/modules/X11/devX11.c 2012-05-28 20:53:33.000000000 -0400
++++ R-devel-patched/src/modules/X11/devX11.c 2012-06-18 10:36:47.447245038 -0400
+@@ -70,6 +70,7 @@
+ typedef int (*X11IOhandler)(Display *);
+
+ #include "devX11.h"
++#include "rlogo_icon.h" /* hard-coded ARGB icon */
+
+ #include <Rmodules/RX11.h>
+
+@@ -1580,17 +1581,24 @@
+
+ XStoreName(display, xd->window, xd->title);
+
+-#ifndef USE_Xt
+ /* For those too idle to make use of Xt (PR#14588) */
++ /* Not sure reason for above comment -- even with Xt, WM_CLASS
++ is not set on xd->window */
+ XClassHint *chint;
+ chint = XAllocClassHint();
+ if (chint) {
+- chint->res_name = "r_x11";
+- chint->res_class = "R_x11";
++ chint->res_name = "graphics";
++ chint->res_class = "R";
+ XSetClassHint(display, xd->window, chint);
+ XFree(chint);
+ }
+-#endif
++
++ /* set window icon -- hardcoded into rlogo_icon.h */
++ XChangeProperty(display, xd->window,
++ XInternAtom(display, "_NET_WM_ICON", False),
++ XInternAtom(display, "CARDINAL", False), 32,
++ PropModeReplace,
++ (const unsigned char*) rlogo_icon, 2 + 48*48);
+
+ /* set up protocols so that window manager sends */
+ /* me an event when user "destroys" window */
+diff -Naur R-devel/src/modules/X11/rlogo_icon.h R-devel-patched/src/modules/X11/rlogo_icon.h
+--- R-devel/src/modules/X11/rlogo_icon.h 1969-12-31 19:00:00.000000000 -0500
++++ R-devel-patched/src/modules/X11/rlogo_icon.h 2012-06-07 14:54:07.219041708 -0400
+@@ -0,0 +1,51 @@
++unsigned long rlogo_icon[] = {
++ 48,48,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1868983,0x27e837a,0x6959595,0x2a888b85,0x5881857f,0x7d7f827b,0x9b7e827a,0xb17c8078,0xc07c7f78,0xc97c8179,0xca797e76,0xc3777c73,0xb4777b74,0x9d747971,0x8074786f,0x5b757870,0x2e797d75,0x77e847e,0x164685f,0x16b7168,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x38a8d88,0x68b8f89,0x288b8e89,0x71868983,0xba848881,0xf6838780,0xff838780,0xff838780,0xff848881,0xff848881,0xff848881,0xff848881,0xff858982,0xff81857e,0xff80847d,0xff7f837b,0xff7c8079,0xff787e76,0xff747a71,0xff71766d,0xf86f736b,0xbf6d7269,0x766c7169,0x2c70726c,0x7656a62,0x3666b63,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x58a8e87,0x1a8d918b,0x608a8f88,0xc9888c86,0xff878c85,0xff898d87,0xff8b8f89,0xff8c9089,0xfe8d918b,0xfe8f938d,0xff90948e,0xff91958e,0xff91968f,0xff91968f,0xff939891,0xff8f948d,0xff8f938c,0xff8d918b,0xff8a8f88,0xff878c85,0xfe858983,0xfe82867f,0xff7d8179,0xff777c73,0xff70756c,0xff6a6f66,0xcf676c63,0x65666c63,0x1d656a61,0x55f655b,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x290978c,0x208e918b,0x728c9089,0xe48a8f88,0xff8c918a,0xff90948d,0xff91958e,0xfe929690,0xff91958e,0xff8d918a,0xff8d9189,0xff8e938c,0xff92968f,0xff959992,0xff959a93,0xff959a93,0xff959a93,0xff949992,0xff939891,0xff939891,0xff929790,0xff91968f,0xff90948e,0xff8e938c,0xff8a8f88,0xff858a83,0xfe81857e,0xff7b8078,0xff737870,0xff696e65,0xe963685f,0x7a61675e,0x245f645b,0x3626660,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x1091948f,0x5a8f928c,0xd68e918a,0xff90948d,0xff969a93,0xfe979a94,0xfe939790,0xff878c84,0xff7b7f77,0xff7a7f77,0xff858983,0xff92968f,0xff9b9f99,0xff9da19b,0xff999e97,0xff91958f,0xfe888c84,0xff7e827b,0xff767a73,0xff70756d,0xff6d726a,0xff6c7068,0xff6d7169,0xff6f746b,0xff72776f,0xff777c74,0xff7c8179,0xfe81867f,0xfe848881,0xfe82857f,0xfe7b8079,0xff72776f,0xff656a62,0xdd5e635a,0x605b6058,0x135b6057,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x2792968f,0x9790938d,0xff91948f,0xff9a9e97,0xfe9da19b,0xfe959992,0xff7e837b,0xff6f746c,0xff7c8078,0xff949791,0xffa8aca6,0xffb4b7b2,0xffafb2ad,0xfe999d97,0xff81857e,0xff6e726b,0xff5d6259,0xff53584f,0xfc4b4f47,0xf2464b43,0xea454941,0xe4454941,0xe1444941,0xe0474c44,0xe34b5048,0xe84f544c,0xf052574e,0xfa555a51,0xff5a6057,0xff62685e,0xff6e736b,0xff7a7e77,0xfe7d827a,0xfe797e75,0xff6d7169,0xff5d625a,0xa0575c53,0x2d54594f,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x3791958f,0xbf91958e,0xff969993,0xffa5a9a3,0xfea0a49e,0xff848881,0xff6a6f67,0xff7b8078,0xff9ea29b,0xffbabdb8,0xffc6c9c4,0xfeb5b8b3,0xfe949892,0xff737770,0xff535850,0xf93e423a,0xdc30342d,0xf150534e,0xde52544f,0xf8767874,0xdf7f817d,0xca888a86,0xbb8f918d,0xb4929591,0xb3949692,0xba929490,0xc68e918c,0xda8a8c88,0xec82847f,0xe871756e,0xeb686d65,0xeb5c6159,0xf2545950,0xff61665e,0xff72766e,0xff797e76,0xff71766e,0xff5e635b,0xc853584f,0x3f4e534b,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x37949892,0xcf92968f,0xff999d96,0xfeafb2ad,0xfe9a9e97,0xff72776f,0xff6d7169,0xff979b95,0xffbfc2be,0xffd1d3d0,0xfec0c2be,0xfe979c95,0xff6c7069,0xff434740,0xdf252922,0xe14a4d48,0xf180817d,0xc0999b96,0xe6d7d7d5,0xc3fbfbfa,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xf5ffffff,0xd5ffffff,0xdbe2e3e1,0xdebdbfbb,0xdf949892,0xe8787c76,0xe85b6057,0xfa5f645b,0xff72776f,0xfe737870,0xff60655c,0xd94f544b,0x3f4a4f47,0x0,0x0,0x0,
++ 0x0,0x0,0x21959993,0xcb949791,0xff9a9e97,0xfeb8bbb6,0xff939690,0xff666b63,0xff787d75,0xffaeb1ac,0xffd5d7d4,0xffd4d6d3,0xfeaeb1ac,0xff797d76,0xff42463f,0xf331352e,0xeb61635f,0xd0969895,0xc5cbced2,0xf4eef1f7,0xffeef1f7,0xfceaedf2,0xffe7eaef,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfbe5e7ed,0xfee6e9ee,0xfde9ecf1,0xf1f4f5f9,0xd4ffffff,0xd5f7f6f4,0xe8c4c5c1,0xe790938e,0xea62675f,0xfe696f66,0xff73776f,0xff5d625a,0xd4494e46,0x29494d45,0x0,0x0,
++ 0x0,0x4989e98,0xa7939791,0xff989c96,0xfebbbeb9,0xff979a94,0xff60655c,0xff7e827b,0xffbabdb9,0xffe0e2df,0xffd3d5d2,0xfea0a49e,0xff5f645d,0xf8272b24,0xdb3a3e38,0xe3a1a3a1,0xebf0f0f0,0xffffffff,0xd9bcc5d8,0xf4a0acc7,0xfaa0acc7,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc9,0xf99daac5,0xec94a0b9,0xe397a1b7,0xd8b3b8c7,0xcef1f2f7,0xe5fdfdfc,0xd1c4c7c3,0xd37d827a,0xfe6c7068,0xff72776f,0xff565b53,0xb442473f,0x85c5f57,0x0,
++ 0x0,0x52959993,0xff969a93,0xffaeb2ad,0xfeabaea9,0xff5e625a,0xff7b7f78,0xffbabdb8,0xffe7e8e6,0xffd6d7d4,0xfe9ea19c,0xff525750,0xec1a1e17,0xce555753,0xd7d6d6d5,0xf7ffffff,0xffffffff,0xffffffff,0xcf929eb8,0xf79babcd,0xff7a86a2,0xff6a748d,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a748d,0xff69758e,0xff6c7894,0xff7785a4,0xe96d7b9d,0xd76d7790,0xcfb6bac5,0xe5ffffff,0xebefefee,0xb2949791,0xf16d7269,0xff70756d,0xff474c44,0x6140443d,0x0,
++ 0x1b0a7b6,0xd2949891,0xff9ca09a,0xfec5c7c3,0xff656961,0xff6e736a,0xffaaada8,0xffe9eae8,0xffe0e2e0,0xfea9ada7,0xff565a52,0xeb181c16,0xbf565955,0xd7ededed,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b8,0xf6a7b6d9,0xff5b657b,0xff6d7a96,0xff707c9a,0xff707c9a,0xff6f7c99,0xff6c7997,0xff6c7997,0xff6d7a98,0xff6d7a98,0xff6d7a98,0xff6d7a97,0xff6d7a98,0xff6e7a98,0xff6e7b99,0xff6d7b98,0xfe6a7692,0xfe5f6a83,0xff606b83,0xff677490,0xee58637c,0xc9a5a9b4,0xf8fdfdfe,0xdffcfcfc,0xaea9ada7,0xf7767b72,0xff646961,0xde393d36,0x65e6358,
++ 0x39959992,0xff949892,0xffadb0ab,0xff9b9e99,0xff5a5e56,0xff90938d,0xffd8d9d7,0xffefefee,0xffc1c3bf,0xff6e726b,0xf821241e,0xd5525451,0xd9eeefee,0xfcffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff545d73,0xff7f91b6,0xff8495bc,0xff8395bc,0xff8496bc,0xffabbada,0xffaab9dc,0xffa5b5d9,0xffa5b5d9,0xffa5b5d9,0xffa7b6da,0xffa5b4d8,0xff9babcf,0xff90a1c5,0xff8798be,0xff7e8fb5,0xff7786aa,0xfe6f7d9c,0xfe636f89,0xff5b6781,0xea454e63,0xe4d1d3d7,0xffffffff,0xe9ffffff,0xb39fa29c,0xfd7a7f77,0xff42473f,0x473a3d35,
++ 0x8292968f,0xff969a94,0xfebdc0bc,0xff62675e,0xff70756d,0xffb0b3ad,0xfff1f1f0,0xffdfe1de,0xfe9ca09a,0xff393d36,0xea3b3d39,0xdecacac9,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8192b8,0xff8597be,0xff8496be,0xfea4b4d6,0xff8e9cb9,0xff5e6880,0xff5d6880,0xff5d6880,0xff5d6880,0xff5d677f,0xff5c677f,0xff68748e,0xfe7b89a7,0xff8291b2,0xff8495ba,0xff8799c1,0xff8496bd,0xff7887a9,0xfe677490,0xff424c62,0xd3797d88,0xf4f2f2f3,0xffffffff,0xeefcfcfc,0xce82867f,0xff5e635b,0x9430342e,
++ 0xb590948d,0xff969a93,0xffafb2ad,0xff53584f,0xff82867e,0xffcaccc8,0xfff4f5f4,0xffcbcdc9,0xff777b74,0xf320241d,0xe9787a76,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff95a4c4,0xfe474f64,0xf31b1e26,0xcb222632,0xcd222632,0xcd222632,0xcc212531,0xcd222633,0xe9343b4b,0xff515c74,0xfe6f7b99,0xfe7886a5,0xff8294b9,0xff8597bf,0xff8597bf,0xfe7a89a9,0xff545f78,0xd3303745,0xf4e2e3e4,0xffffffff,0xffffffff,0xd0cccdca,0xff7a7e77,0xc62d312a,
++ 0xcf8e928b,0xff949892,0xff9b9e98,0xff585d54,0xff8d928a,0xffd8d9d7,0xfff0f1f0,0xffbcbfba,0xff5b5f57,0xeb31342e,0xe0abacab,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8895b4,0xfc3f475b,0xc7383a40,0xfcf7f7f7,0xf9efefef,0xf9efefef,0xf9efefef,0xfdf0f0f1,0xd3e0e1e4,0xaf6d778c,0xff717e9d,0xfe7783a0,0xff7080a1,0xff8699c0,0xff8597bf,0xff8596b9,0xff616d88,0xf2282e3b,0xfbdbdbdc,0xffffffff,0xffffffff,0xc8fcfcfc,0xfa8b8f88,0xdf2f332d,
++ 0xce8a8e88,0xff91958f,0xff8b8f89,0xff5b5f57,0xff90958e,0xffdbdddb,0xffedeeed,0xffb5b8b3,0xff4f544c,0xf74b4e49,0xf3cccdcd,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfeffffff,0xe3cfd4dd,0xdc8091b3,0xff7a87a2,0xff6a7896,0xff8799c1,0xff8496be,0xff8e9ec2,0xfe67748f,0xff222734,0xffd7d7d9,0xfeffffff,0xffffffff,0xfdffffff,0xde949992,0xdf31352f,
++ 0xb4878b85,0xff8d918b,0xff8a8e87,0xff5b6057,0xff8d908a,0xffd5d7d5,0xffecedec,0xffb5b8b3,0xff535851,0xf74e524d,0xf2d0d1cf,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xe6d6dae4,0xd88f9fc4,0xff7e8aa4,0xff657290,0xff8799c1,0xff8396bd,0xff95a6c9,0xff646f89,0xf01a1e28,0xfbd8d8d9,0xffffffff,0xfefefefe,0xffffffff,0xdc969a94,0xc5292d27,
++ 0x83858982,0xff878c85,0xfe8a8e87,0xff5d625a,0xff82857f,0xffc4c6c3,0xffecedeb,0xffbdbfba,0xff6a6e67,0xe93e423c,0xdeb7b8b6,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc43d3f45,0xffffffff,0xfefefefe,0xfefefefe,0xfefefefe,0xfffefefe,0xf5fcfcfd,0xecc0c9dc,0xfd9daed1,0xff818ba1,0xff5f6c8a,0xff889ac2,0xff8899c0,0xfe9dacd0,0xff535c72,0xcb0f1119,0xf2dfdfdf,0xffffffff,0xffffffff,0xc7ffffff,0xf78a8e88,0x9321241f,
++ 0x37848881,0xff80847d,0xff888c85,0xff6b7068,0xff737870,0xffaaada8,0xffe6e7e5,0xffcbceca,0xff898d86,0xef343931,0xe58e8f8c,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff808ead,0xfd495268,0xe54f5668,0xfebcc4d5,0xf9bac0d2,0xfab9c0d2,0xfbbac1d2,0xeeb5bdcf,0xd894a3c1,0xf899abcf,0xff99a5ba,0xfe636e81,0xff7686ab,0xff8597bf,0xfea5b6d8,0xff8c9ab8,0xff292e3c,0xc0525356,0xf0f0f0f0,0xffffffff,0xffffffff,0xcadedfdd,0xf8626660,0x47272926,
++ 0x0,0xd27c8078,0xff81857e,0xfe7c817a,0xff696e66,0xff8e928b,0xffcbcdca,0xffd9dad8,0xfea7aba5,0xff5a5f56,0xe65b5f58,0xdbdfdfde,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xfe7786a5,0xff6c7893,0xff7d8cab,0xff808eb1,0xff8190b2,0xff8090b2,0xff8090b1,0xff8493b5,0xff9eaecd,0xffa0adc1,0xfe5d6573,0xff657390,0xff90a2c8,0xfeaabad8,0xffa5b4d0,0xff4a5265,0xe90c0d12,0xd4c5c4c5,0xf7ffffff,0xffffffff,0xf8ffffff,0xbd9a9e98,0xd8333732,0x3676868,
++ 0x0,0x51797d76,0xff787d75,0xff81857e,0xfe73776f,0xff787d75,0xffa3a5a0,0xffd4d6d3,0xffc1c4c0,0xff8e928b,0xf3464b42,0xcd7d807b,0xe0fcfdfc,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff8294ba,0xff58647d,0xff596276,0xff5d657a,0xff5e677b,0xff5e677b,0xff5f677c,0xff5e667a,0xff4e5667,0xff525a6c,0xfe8f9db8,0xfeacbcdc,0xffacbad6,0xff8390aa,0xfe3a4153,0xfa16181c,0xad7e7e7f,0xe9fbfbfb,0xffffffff,0xffffffff,0xa1c4c6c2,0xf5646762,0x6121221f,0x0,
++ 0x0,0x0,0xae747870,0xff787c74,0xff7d817a,0xfe747871,0xff848880,0xffacafaa,0xffc9ccc7,0xfeb1b5af,0xff7f847d,0xe4484d45,0xd29c9f9b,0xeefcfcfc,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff8597be,0xff92a3c9,0xff8b9bc0,0xff8797bb,0xff8697bb,0xff8394b8,0xff8090b5,0xff7c8eb3,0xff91a2c6,0xfea8b6d4,0xff707c95,0xff4b5469,0xfa353b4d,0xf01e212b,0xe3252527,0xcaa2a2a2,0xf5ffffff,0xffffffff,0xf2ffffff,0xeae4e6e4,0xf8828680,0xba282b27,0x3515154,0x0,
++ 0x0,0x0,0x1a73796f,0xd36f736b,0xff757a72,0xfe7b7e77,0xfe797d75,0xff898d86,0xffabaea9,0xffbbbeba,0xfea8aca6,0xff7e827b,0xec575c54,0xc6939791,0xdff0f0ef,0xfdffffff,0xffffffff,0xffffffff,0xcf93a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xfe92a3c8,0xffabbad6,0xff97a5c3,0xff94a1bf,0xff93a1bf,0xff8f9dbd,0xfe8c9cbe,0xff8698bc,0xff8e9fc3,0xff68748d,0xfe242937,0xfa2b2e37,0xd23c3e43,0xb9868786,0xccf3f3f3,0xf8ffffff,0xffffffff,0xf0f9faf9,0xc6d6d7d4,0xee7e817b,0xd8333731,0x23272a27,0x0,0x0,
++ 0x0,0x0,0x0,0x326d7069,0xd66a6f67,0xff70756d,0xff787d75,0xfe7d817a,0xff8a8e87,0xffa3a6a1,0xffafb2ac,0xfea2a69f,0xff848881,0xef5c6158,0xd9858882,0xe5d2d3d1,0xedfafaf9,0xffffffff,0xd095a1ba,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xffa3b3d3,0xfe66728b,0xfb2f3544,0xeb31384a,0xee333b4d,0xfc495369,0xff697693,0xfe7c8ba9,0xff7988a8,0xff626e88,0xfe616c86,0xef8490ab,0xcda5aec3,0xdbd5d8e1,0xf3fbfbfd,0xeaffffff,0xedededec,0xcbb7bab5,0xfd757972,0xde3a3d39,0x3d1f211e,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x36696e66,0xc5656a62,0xff6a6f67,0xff737870,0xfe7c8079,0xff888b84,0xff999c96,0xffa2a6a0,0xfe9ca09a,0xff8b8f88,0xff6d7169,0xe76c7068,0xda9fa39d,0xe9dadad6,0xd18a97af,0xf7a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496be,0xff8b9ab9,0xfd3b4255,0xdd212227,0xdd929397,0xdc8a8b90,0xdd747984,0xf95d6880,0xff6e7c9a,0xfe707d9a,0xfe697591,0xff6c7892,0xff6c7894,0xff687493,0xeb5d6985,0xd4969ba6,0xd4c2c4c1,0xda8c9089,0xff61655e,0xcd333731,0x401d1f1b,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x26636960,0xa160665d,0xf6646960,0xff6a6f67,0xff767a72,0xfe81857d,0xff8e928b,0xff999c96,0xfe989c95,0xfe90948d,0xff81857d,0xfe6c7068,0xe8777a70,0xea727e92,0xfca5b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8694b3,0xfc40475c,0xbe404249,0xffffffff,0xffffffff,0xdfffffff,0xd9a7adba,0xf462708e,0xff7b88a6,0xff687592,0xff687593,0xfe636e89,0xfe6b7791,0xff606c87,0xf94a5367,0xff5c6161,0xfb51544e,0xa9262924,0x2c171a15,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0xd63685f,0x695d6258,0xc95d6259,0xff60655d,0xff686d65,0xff737870,0xfe80837c,0xff8b8f88,0xff91958e,0xfe91968f,0xff8d918b,0xff84877d,0xff747f90,0xffa5b4d6,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfd40475c,0xd0383a3f,0xd6dddedb,0xe8d8d9d7,0xb9cdceca,0xb5b0b3b3,0xe869748a,0xff717f9e,0xff7784a1,0xff7e8fb3,0xff8496bd,0xff7281a2,0xfe66738e,0xff515c74,0xff3d434f,0x7f252928,0xe121206,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x2d5b5f56,0x79585d54,0xcf585e55,0xff5a5f57,0xff61665e,0xff6b7068,0xff767b73,0xfe80847c,0xff878b84,0xff8c9087,0xff798497,0xffa5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40485c,0xf33c3f41,0xdf92968f,0xed959993,0xcd848881,0xe08d918a,0xf983898f,0xff6d7a98,0xff7784a1,0xff717f9e,0xff8698c0,0xff8799c1,0xff7584a4,0xff626e89,0xff495267,0x68505869,0x3dae3fe,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x366685c,0x2d535850,0x65535850,0xae535850,0xf352584f,0xff555a51,0xff5b6058,0xff636860,0xff6c7066,0xff6e7a8c,0xfea5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40485c,0xff3e4143,0xff898d85,0xff81857d,0xff7c8079,0xff72766e,0xff616662,0xff576071,0xff7380a0,0xfe7884a2,0xff7888ab,0xff8799c1,0xff8293b9,0xfe6d7a98,0xff56617a,0xe5495264,0x2f565b6a,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1b4f544c,0x374c5149,0x664e524a,0xa04d5249,0xd54c5249,0xff4b4e44,0xff5f6a7c,0xffa4b3d5,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40475b,0xff2a2d2e,0xff51554c,0xff484c44,0xff41453e,0xff3c4039,0xd5363b33,0xc1444c53,0xf26e7b99,0xff74819e,0xff7482a1,0xff8496bd,0xff8698c0,0xff7a8aac,0xff677490,0xff4b556b,0x9d4e5566,0xe555b67,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x35b5f58,0x14494e46,0x22464b43,0x2534351d,0xb86d7b97,0xfba6b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40475b,0xde23262a,0x833d4038,0x6d3a3d37,0x4d393d36,0x3032352e,0x2026291f,0x29585f68,0xa2697591,0xff717f9e,0xfe7684a1,0xff7686a8,0xff8699c0,0xff8597be,0xfe6f7d9b,0xff5f6b85,0xff474f63,0x4b575d6c,0x2c9cccc,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a5,0xfaa7b6d9,0xff535c72,0xff7e90b6,0xff8295bc,0xff8294bc,0xff8593b2,0xfd40485c,0xb6292b32,0x28c8941,0x6434641,0x0,0x0,0x0,0x0,0x4d67728c,0xee6e7b97,0xff727f9c,0xfe7582a1,0xff8192b8,0xff8396be,0xff7e8fb3,0xfe687490,0xff4f5a72,0xd14a5264,0x14525869,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a4,0xfaa7b6d9,0xff717d97,0xffa5b5d7,0xffabbadd,0xffabbadd,0xff9faecd,0xfd40475c,0xb22a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0xe9099aa,0x9766728e,0xff727f9e,0xfe8492b0,0xff9aa8ca,0xffadbcdf,0xffacbbde,0xfe9eadcc,0xff7f8ca8,0xff4a5369,0x76545b69,0x6616670,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa37a8bac,0xfc72809c,0xff515b72,0xff515a71,0xff515b72,0xff515b72,0xff505a71,0xfe3a4255,0xb32a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x486c7690,0xe267738f,0xff56627b,0xff4c566b,0xff4e586e,0xff4e586e,0xff4e576d,0xff4d576c,0xff465065,0xf9434c5d,0x27616977,0x0,0x0,0x0,
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++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++};
diff --git a/debian/icon-class-patch/rlogo_icon.png.mpack b/debian/icon-class-patch/rlogo_icon.png.mpack
new file mode 100644
index 0000000..319e679
--- /dev/null
+++ b/debian/icon-class-patch/rlogo_icon.png.mpack
@@ -0,0 +1,99 @@
+Message-ID: <20222.1340326361@max.nulle.part>
+Mime-Version: 1.0
+Subject: logo
+Content-Type: multipart/mixed; boundary="-"
+
+This is a MIME encoded message. Decode it with "munpack"
+or any other MIME reading software. Mpack/munpack is available
+via anonymous FTP in ftp.andrew.cmu.edu:pub/mpack/
+---
+Content-Type: application/octet-stream; name="rlogo_icon.png"
+Content-Transfer-Encoding: base64
+Content-Disposition: inline; filename="rlogo_icon.png"
+Content-MD5: nf6LO2ghBfua60YdcykYTg==
+
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+
+-----
diff --git a/debian/javareconf.patch b/debian/javareconf.patch
new file mode 100644
index 0000000..14a02d2
--- /dev/null
+++ b/debian/javareconf.patch
@@ -0,0 +1,18 @@
+--- javareconf.orig 2008-08-25 06:26:13.000000000 -0500
++++ javareconf 2008-08-25 06:30:49.000000000 -0500
+@@ -292,9 +295,13 @@
+
+ test "${dry_run}" = yes && exit 0
+
+-echo "Updating Java configuration in ${R_HOME}"
++## edd 28 Sep 2006 Debian's R config is in /etc/R, so overrride where R_HOME was used
+
+-files="${R_HOME}/etc${R_ARCH}/Makeconf ${R_HOME}/etc${R_ARCH}/ldpaths"
++#echo "Updating Java configuration in ${R_HOME}"
++echo "Updating Java configuration in /etc/R"
++
++#files="${R_HOME}/etc${R_ARCH}/Makeconf ${R_HOME}/etc${R_ARCH}/ldpaths"
++files="/etc/R/Makeconf /etc/R/ldpaths"
+ for file in $files; do
+ ${SED-sed} -e "s|JAVA =.\{0,\}|JAVA = $JAVA|" -e "s|JAVA_HOME =.\{0,\}|JAVA_HOME = ${JAVA_HOME}|" -e "s|: \${JAVA_HOME=.\{1,\}|: \${JAVA_HOME=${JAVA_HOME}}|" -e "s|: \${R_JAVA_LD_LIBRARY_PATH=.\{1,\}|: \${R_JAVA_LD_LIBRARY_PATH=${JAVA_LD_LIBRARY_PATH_SH}}|" -e "s|JAVA_LIBS =.\{0,\}|JAVA_LIBS = ${JAVA_LIBS}|g" -e "s|JAVA_LD_LIBRARY_PATH =.\{0,\}|JAVA_LD_LIBRARY_PATH = ${JAVA_LD_LIBRARY_PATH}|" -e "s|JAVAC =.\{0,\}|JAVAC = $JAVAC|" -e "s|JAVAH =.\{0,\}|JAVAH = $JAVAH|" -e "s|JAR =.\{0,\}|JAR = $JAR|" "${file}" -e "s|JAVA_CPPFLAGS =.\{0,\}|JAVA_CPPFLAGS = ${JAVA_CPPFLAGS}|g"> "${file}.new"
+ if test -f "${file}.new"; then
diff --git a/debian/libR.conf b/debian/libR.conf
new file mode 100644
index 0000000..91b69b2
--- /dev/null
+++ b/debian/libR.conf
@@ -0,0 +1,2 @@
+# make libR.so and libRlapack.so visible to ld.so
+/usr/lib/R/lib
diff --git a/debian/override-bz2-version-check.patch b/debian/override-bz2-version-check.patch
new file mode 100644
index 0000000..a3322b6
--- /dev/null
+++ b/debian/override-bz2-version-check.patch
@@ -0,0 +1,22 @@
+--- r-base-2.13.1.orig/configure
++++ r-base-2.13.1/configure
+@@ -32899,7 +32899,7 @@
+ #endif
+ int main() {
+ char *ver = BZ2_bzlibVersion();
+- exit(strcmp(ver, "1.0.6") < 0);
++ exit(0); /* edd: override, Debian's 1.0.5 is patched strcmp(ver, "1.0.6") < 0); */
+ }
+
+ _ACEOF
+--- r-base-2.13.1.orig/m4/R.m4
++++ r-base-2.13.1/m4/R.m4
+@@ -3049,7 +3049,7 @@
+ #endif
+ int main() {
+ char *ver = BZ2_bzlibVersion();
+- exit(strcmp(ver, "1.0.6") < 0);
++ exit(0); /* edd: override, Debian's 1.0.5 is patched strcmp(ver, "1.0.6") < 0); */
+ }
+ ]])], [r_cv_have_bzlib=yes], [r_cv_have_bzlib=no], [r_cv_have_bzlib=no])
+ LIBS="${r_save_LIBS}"
diff --git a/debian/papersize.sh b/debian/papersize.sh
new file mode 100644
index 0000000..dbcf45f
--- /dev/null
+++ b/debian/papersize.sh
@@ -0,0 +1,19 @@
+#!/bin/bash
+
+cp /etc/R/Renviron /tmp/
+Sysfile=/etc/papersize
+Rfile=/tmp/Renviron
+
+syspaper=`cat $Sysfile`
+echo "Papersize in /etc is $syspaper"
+
+rpaper=`grep ^R_PAPERSIZE $Rfile | cut -d"'" -f2`
+echo "Papersize in Renviron is $rpaper"
+
+if [ "$syspaper" != "$rpaper" ]; then
+ echo "Need to replace $rpaper with $syspaper"
+
+ perl -p -i -e "s|\'$rpaper\'|\'$syspaper\'|" "$Rfile"
+fi
+
+grep PAPERSIZE $Rfile
diff --git a/debian/r-base-core-dbg.dirs b/debian/r-base-core-dbg.dirs
new file mode 100644
index 0000000..1da8fba
--- /dev/null
+++ b/debian/r-base-core-dbg.dirs
@@ -0,0 +1 @@
+usr/share/lintian/overrides
diff --git a/debian/r-base-core-dbg.lintian b/debian/r-base-core-dbg.lintian
new file mode 100644
index 0000000..f140f8d
--- /dev/null
+++ b/debian/r-base-core-dbg.lintian
@@ -0,0 +1,2 @@
+r-base-core-dbg: file-missing-in-md5sums usr/lib/debug/usr/bin/Rscript
+r-base-core-dbg: file-missing-in-md5sums usr/lib/debug/usr/lib/R/bin/Rscript
diff --git a/debian/r-base-core.bash-completion b/debian/r-base-core.bash-completion
new file mode 100644
index 0000000..5c3bdbe
--- /dev/null
+++ b/debian/r-base-core.bash-completion
@@ -0,0 +1 @@
+debian/R.bash-completion R
diff --git a/debian/r-base-core.dirs b/debian/r-base-core.dirs
new file mode 100644
index 0000000..614c1fe
--- /dev/null
+++ b/debian/r-base-core.dirs
@@ -0,0 +1,12 @@
+etc/R
+etc/ld.so.conf.d
+usr/share/bash-completion/completions
+usr/bin
+usr/lib/R
+usr/lib/R/site-library
+usr/share/doc/r-base-core
+usr/share/lintian/overrides
+usr/share/R/include/
+usr/share/texmf/tex/latex
+usr/share/icons/hicolor/48x48/apps
+usr/share/applications
diff --git a/debian/r-base-core.files b/debian/r-base-core.files
new file mode 100644
index 0000000..b412ff1
--- /dev/null
+++ b/debian/r-base-core.files
@@ -0,0 +1,3 @@
+usr/bin
+usr/lib/R/
+usr/share
diff --git a/debian/r-base-core.lintian b/debian/r-base-core.lintian
new file mode 100644
index 0000000..3c06e42
--- /dev/null
+++ b/debian/r-base-core.lintian
@@ -0,0 +1,109 @@
+r-base-core: shlib-with-non-pic-code usr/lib/R/modules/internet.so
+r-base-core: shlib-with-non-pic-code usr/lib/R/modules/lapack.so
+r-base-core: shlib-with-non-pic-code usr/lib/R/modules/vfonts.so
+r-base-core: shlib-with-non-pic-code usr/lib/R/library/modreg/libs/modreg.so
+r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/function.html
+r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/is.function.html
+r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/remove.packages.html
+r-base-core: file-missing-in-md5sums usr/lib/R/doc/html/function.html
+r-base-core: file-missing-in-md5sums usr/share/R/doc/html/packages.html
+r-base-core: file-missing-in-md5sums usr/share/R/doc/html/search/index.txt
+r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/as.function.html
+r-base-core: file-missing-in-md5sums usr/bin/R
+r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/update.packages.html
+r-base-core: file-missing-in-md5sums usr/lib/R/library/base/help/make.packages.html
+r-base-core: file-missing-in-md5sums usr/lib/R/library/utils/help/make.packages.html
+r-base-core: file-missing-in-md5sums usr/bin/Rscript
+r-base-core: file-missing-in-md5sums usr/lib/R/library/utils/R-ex/make.packages.html.R
+r-base-core: file-missing-in-md5sums usr/lib/R/bin/Rscript
+r-base-core: file-missing-in-md5sums usr/lib/R/etc/Renviron.ucf
+r-base-core: extra-license-file usr/lib/R/library/base/help/license
+r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/left.jpg
+r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/logo.jpg
+r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/logosm.jpg
+r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/right.jpg
+r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/up.jpg
+r-base-core: script-not-executable usr/lib/R/share/perl/build-help.pl
+r-base-core: lengthy-symlink usr/share/R/doc/COPYING ../../../share/common-licenses/GPL
+r-base-core: lengthy-symlink usr/share/R/doc/COPYING.LIB ../../../share/common-licenses/LGPL
+r-base-core: script-not-executable ./usr/lib/R/share/perl/build-help.pl
+r-base-core: menu-item-creates-new-root-section Applications /usr/share/menu/r-base-core:5
+r-base-core: pkg-has-shlibs-control-file-but-no-actual-shared-libs
+r-base-core: extra-license-file usr/share/R/share/licenses/license.db
+r-base-core: package-contains-empty-directory usr/lib/R/library/graphics/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/base/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/tools/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/methods/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/splines/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/tcltk/html/
+r-base-core: package-contains-empty-directory usr/share/info/
+r-base-core: package-contains-empty-directory usr/share/R/doc/manual/
+r-base-core: package-contains-empty-directory usr/lib/R/library/grid/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/site-library/
+r-base-core: package-contains-empty-directory usr/lib/R/library/graphics/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/stats/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/stats4/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/stats/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/grDevices/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/utils/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/datasets/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/datasets/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/grDevices/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/tcltk/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/methods/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/splines/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/base/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/stats4/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/grid/html/
+r-base-core: package-contains-empty-directory usr/lib/R/library/tools/latex/
+r-base-core: package-contains-empty-directory usr/lib/R/library/utils/html/
+r-base-core: executable-not-elf-or-script usr/share/R/share/sh/help-print.sh
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/REMOVE
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Sweave
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/config
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/SHLIB
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/LINK
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/javareconf.orig
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/INSTALL
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/rtags
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/BATCH
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Stangle
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rd2dvi
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/COMPILE
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/javareconf
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rd2txt
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rdconv
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/build
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rprof
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/check
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rdiff
+r-base-core: image-file-in-usr-lib usr/lib/R/library/graphics/help/figures/mai.png
+r-base-core: image-file-in-usr-lib usr/lib/R/library/graphics/help/figures/oma.png
+r-base-core: image-file-in-usr-lib usr/lib/R/library/graphics/help/figures/pch.png
+r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rd2pdf
+r-base-core: hardening-no-relro usr/bin/Rscript
+r-base-core: hardening-no-relro usr/lib/R/bin/Rscript
+r-base-core: hardening-no-relro usr/lib/R/bin/exec/R
+r-base-core: hardening-no-relro usr/lib/R/lib/libR.so
+r-base-core: hardening-no-relro usr/lib/R/library/grDevices/libs/cairo.so
+r-base-core: hardening-no-relro usr/lib/R/library/grDevices/libs/grDevices.so
+r-base-core: hardening-no-relro usr/lib/R/library/graphics/libs/graphics.so
+r-base-core: hardening-no-relro usr/lib/R/library/grid/libs/grid.so
+r-base-core: hardening-no-relro usr/lib/R/library/methods/libs/methods.so
+r-base-core: hardening-no-relro usr/lib/R/library/parallel/libs/parallel.so
+r-base-core: hardening-no-relro usr/lib/R/library/splines/libs/splines.so
+r-base-core: hardening-no-relro usr/lib/R/library/stats/libs/stats.so
+r-base-core: hardening-no-relro usr/lib/R/library/tcltk/libs/tcltk.so
+r-base-core: hardening-no-relro usr/lib/R/library/tools/libs/tools.so
+r-base-core: hardening-no-relro usr/lib/R/library/utils/libs/utils.so
+r-base-core: hardening-no-relro usr/lib/R/modules/R_X11.so
+r-base-core: hardening-no-relro usr/lib/R/modules/R_de.so
+r-base-core: hardening-no-relro usr/lib/R/modules/internet.so
+r-base-core: hardening-no-relro usr/lib/R/modules/lapack.so
+r-base-core: hardening-no-relro usr/lib/R/modules/vfonts.so
+r-base-core: extra-license-file usr/share/R/share/licenses/Artistic-2.0
+r-base-core: extra-license-file usr/share/R/share/licenses/GPL-2
+r-base-core: extra-license-file usr/share/R/share/licenses/GPL-3
+r-base-core: extra-license-file usr/share/R/share/licenses/LGPL-2
+r-base-core: extra-license-file usr/share/R/share/licenses/LGPL-2.1
+r-base-core: extra-license-file usr/share/R/share/licenses/LGPL-3
diff --git a/debian/r-base-core.maintscript b/debian/r-base-core.maintscript
new file mode 100644
index 0000000..2a0b05b
--- /dev/null
+++ b/debian/r-base-core.maintscript
@@ -0,0 +1 @@
+mv_conffile /etc/bash_completion.d/R /usr/share/bash-completion/completions/R
diff --git a/debian/r-base-core.menu b/debian/r-base-core.menu
new file mode 100644
index 0000000..d4333be
--- /dev/null
+++ b/debian/r-base-core.menu
@@ -0,0 +1,5 @@
+?package(r-base-core): \
+ needs="text" \
+ section="Applications/Science/Data Analysis" \
+ title="GNU R" \
+ command="/usr/bin/R"
diff --git a/debian/r-base-core.postinst b/debian/r-base-core.postinst
new file mode 100644
index 0000000..7007c6e
--- /dev/null
+++ b/debian/r-base-core.postinst
@@ -0,0 +1,65 @@
+#!/bin/sh
+#
+# postinst script for the Debian GNU/Linux r-base-core package
+# This version originally written by Douglas Bates <bates@stat.wisc.edu>
+# and now written and maintained by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+#DEBHELPER#
+
+
+case "$1" in
+ configure)
+ # edd 19 Jun 2004 deal with papersize
+ # edd 22 Jun 2004 make that conditional on paperconf
+ # edd 25 Oct 2006 rewritten for R 2.4.0 and R_PAPERSIZE_USER
+ # edd 21 Jun 2008 rewritten for R 2.7.1 and ucf input
+ # edd 23 Feb 2013 trying to avoid md5sum issues with help from Andy Beckman
+ # edd 26 Feb 2013 correct mode of temp. Renviron file with help from Don Armstrong
+ tmpRenviron=$(mktemp)
+ chmod 0644 "$tmpRenviron"
+ cat /usr/lib/R/etc/Renviron.ucf > "$tmpRenviron"
+ #if [ -x /usr/bin/paperconf ]; then
+ ## get the value we want from Debian's paperconf utility
+ papersize=`paperconf`
+ ## have perl subst. second expression with $papersize for first
+ ## uses the x mod. and curlies to denote the usual s|1st|2nd|
+ perl -p -i -e "s{^R_PAPERSIZE_USER=\\$\{R_PAPERSIZE\}}
+ {R_PAPERSIZE_USER=\\$\{R_PAPERSIZE-'$papersize'\}}x" "$tmpRenviron"
+ #fi
+ # edd 21 Jun 2008 whether or not Renviron was modified, ucf will handle it,
+ # so tell ucf that file Renviron.ucf is the source for
+ # conffile in /etc and register it
+ ucf "$tmpRenviron" /etc/R/Renviron
+ ucfr r-base-core /etc/R/Renviron
+ rm -f "$tmpRenviron"
+ #
+ #if [ -x /usr/bin/update-menus ]; then
+ # update-menus
+ #fi
+
+ # edd 03 Apr 2003 cf Section 10.1.2 of Debian Policy
+ if [ ! -e /usr/local/lib/R ]; then
+ if mkdir /usr/local/lib/R 2>/dev/null; then
+ chown root:staff /usr/local/lib/R
+ chmod 2775 /usr/local/lib/R
+ fi
+ fi
+ if [ ! -e /usr/local/lib/R/site-library ]; then
+ if mkdir /usr/local/lib/R/site-library 2>/dev/null; then
+ chown root:staff /usr/local/lib/R/site-library
+ chmod 2775 /usr/local/lib/R/site-library
+ fi
+ fi
+
+ #if [ -x /usr/bin/mktexlsr ]; then
+ # mktexlsr /usr/share/texmf
+ #fi
+ ;;
+ abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ ;;
+esac
diff --git a/debian/r-base-core.preinst b/debian/r-base-core.preinst
new file mode 100644
index 0000000..70102fb
--- /dev/null
+++ b/debian/r-base-core.preinst
@@ -0,0 +1,34 @@
+#!/bin/sh
+#
+# preinst script for the Debian GNU/Linux r-base-core package
+# This version written by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+#DEBHELPER#
+
+case "$1" in
+ install|upgrade)
+ # edd 06 Feb 2006 2.2.1-4 created this symlink, we now want a directory
+ if [ -h /usr/lib/R/share ]
+ then
+ echo "Removing symbolic link /usr/lib/R/share"
+ rm /usr/lib/R/share
+ fi
+ # edd 27 Jul 2006 this is now a softlink but used to be a dir
+ dir=/usr/share/doc/r-base-core/doc
+ if [ -d $dir ] && [ ! -h $dir ]
+ then
+ rmdir $dir
+ fi
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ ;;
+esac
+
+exit 0
diff --git a/debian/r-base-core.prerm b/debian/r-base-core.prerm
new file mode 100644
index 0000000..a73c2d4
--- /dev/null
+++ b/debian/r-base-core.prerm
@@ -0,0 +1,26 @@
+#!/bin/sh
+#
+# prerm script for the Debian GNU/Linux r-base-core package
+# This version written by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+#DEBHELPER#
+
+case "$1" in
+ remove|purge)
+ # edd 03 Apr 2003 cf Section 10.1.2 of Debian Policy
+ rmdir /usr/local/lib/R/site-library 2>/dev/null || true
+ rmdir /usr/local/lib/R/ 2>/dev/null || true
+ # edd 10 May 2009 cf Section 10.7.3 of Debian Policy
+ # and well as #527618
+ rm /etc/R/Renviron 2>/dev/null || true
+ ucf --purge /etc/R/Renviron
+ ucfr --purge r-base-core /etc/R/Renviron
+ ;;
+ upgrade|abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+ *)
+ echo "prerm called with unknown argument \`$1'" >&2
+ ;;
+esac
diff --git a/debian/r-base-core.shlibs.hidden b/debian/r-base-core.shlibs.hidden
new file mode 100644
index 0000000..a93d225
--- /dev/null
+++ b/debian/r-base-core.shlibs.hidden
@@ -0,0 +1 @@
+libR 1 r-base-core (>= 2.9.2)
diff --git a/debian/r-base-dev.dirs b/debian/r-base-dev.dirs
new file mode 100644
index 0000000..191cd63
--- /dev/null
+++ b/debian/r-base-dev.dirs
@@ -0,0 +1 @@
+usr/share/R/debian/
diff --git a/debian/r-base-dev.links b/debian/r-base-dev.links
new file mode 100644
index 0000000..069b00e
--- /dev/null
+++ b/debian/r-base-dev.links
@@ -0,0 +1 @@
+usr/share/doc/r-base-core usr/share/doc/r-base-dev
diff --git a/debian/r-base-dev.preinst b/debian/r-base-dev.preinst
new file mode 100644
index 0000000..35850cf
--- /dev/null
+++ b/debian/r-base-dev.preinst
@@ -0,0 +1,26 @@
+#! /bin/sh
+#
+# r-base-dev.preinst
+#
+# Written and GPL'ed by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+case "$1" in
+ install|upgrade)
+ # we want symlinks to r-base so old directories cannot exist
+ test -d /usr/share/doc/r-base-dev && rm -rf /usr/share/doc/r-base-dev
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 0
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/r-base-html.files b/debian/r-base-html.files
new file mode 100644
index 0000000..b5d8451
--- /dev/null
+++ b/debian/r-base-html.files
@@ -0,0 +1 @@
+usr/lib/R/library/*/html/
diff --git a/debian/r-base-latex.dirs b/debian/r-base-latex.dirs
new file mode 100644
index 0000000..1da8fba
--- /dev/null
+++ b/debian/r-base-latex.dirs
@@ -0,0 +1 @@
+usr/share/lintian/overrides
diff --git a/debian/r-base-latex.files b/debian/r-base-latex.files
new file mode 100644
index 0000000..934e6a6
--- /dev/null
+++ b/debian/r-base-latex.files
@@ -0,0 +1 @@
+usr/lib/R/library/*/latex
diff --git a/debian/r-base-latex.lintian b/debian/r-base-latex.lintian
new file mode 100644
index 0000000..60cce5b
--- /dev/null
+++ b/debian/r-base-latex.lintian
@@ -0,0 +1 @@
+r-base-latex: extra-license-file usr/lib/R/library/base/latex/license.tex
diff --git a/debian/r-cran.mk b/debian/r-cran.mk
new file mode 100644
index 0000000..7e54a19
--- /dev/null
+++ b/debian/r-cran.mk
@@ -0,0 +1,151 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+#
+# Generic debian/rules file for the Debian/GNU Linux r-cran-* packages
+#
+# Should be sufficient for Debianization of CRAN (http://cran.r-project.org)
+# packages. Note that you still need to provide the other files in debian/*,
+# in particular control, changelog and copyright.
+#
+# Copyright 2003 - 2016 by Dirk Eddelbuettel <edd@debian.org>
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/langcore.mk
+## include /usr/share/cdbs/1/rules/dpatch.mk
+## include /usr/share/cdbs/1/rules/simple-patchsys.mk
+
+# Check whether source format 3.0 (quilt) is used. If yes, do not include the conflicting simple-patchsys.mk
+formatfile := $(CURDIR)/debian/source/format
+format_3_quilt = $(shell if [ -f $(formatfile) ] ; then if grep -q '3.0[[:space:]]*(quilt)' $(formatfile) ; then echo 1 ; else echo 0 ; fi else echo 0 ; fi )
+ifeq ($(format_3_quilt),0)
+ include /usr/share/cdbs/1/rules/simple-patchsys.mk
+endif
+
+# awk command to extract word after Package or Bundle, not lowercased
+awkString := "'/^(Package|Bundle):/ {print $$2 }'"
+
+# apply it to the upstream meta-info file DESCRIPTION, also generate a lc version
+cranNameOrig := $(shell awk "$(awkString)" DESCRIPTION)
+#cranName := $(shell echo "$(cranNameOrig)" | tr A-Z a-z | tr . -)
+cranName := $(shell echo "$(cranNameOrig)" | tr A-Z a-z)
+
+## if no debRreposname is known, set default to cran -- thanks, Steffen!
+ifeq ($(debRreposname),)
+ debRreposname := cran
+endif
+
+## we can define additional flags for R's make, eg "CXXFLAGS=-g0" for
+## RQuantLib but the default is empty
+## makeFlags :=
+## if makeFlags are defined, then we'll use them in this variable
+## which would otherwise be empty
+ifneq ($(makeFlags),)
+ makeFlagsCall := MAKEFLAGS=$(makeFlags)
+endif
+
+## xvfb-run with GL extension and default resolution
+xvfbSrvArgs = -screen 0 1024x768x24 -ac +extension GLX +render -noreset
+
+## and use the results to build the Debian'ized package name
+package := r-$(debRreposname)-$(cranName)
+
+## awk command to extract word after Priority
+prioritystr := "'/^Priority:/ {print tolower($$2) }'"
+priority := $(shell awk "$(prioritystr)" DESCRIPTION)
+
+ifeq ($(priority),recommended)
+ debRdir := usr/lib/R/library
+else
+ debRdir := usr/lib/R/site-library
+endif
+
+## current R version in Debian, with thanks to Charles Plessy for the dpkg-query call
+#rversion := $(shell zcat /usr/share/doc/r-base-dev/changelog.Debian.gz | \
+# dpkg-parsechangelog -l- --count 1 | \
+# awk '/^Version/ {print $$2}')
+rversion := $(shell dpkg-query -W -f='$${Version}' r-base-dev)
+rapiversion := $(shell dpkg-query -W -f='$${Provides}' r-base-core | grep -o 'r-api[^, ]*')
+
+## we use these results for the to-be-installed-in directory
+debRlib := $(CURDIR)/debian/$(package)/$(debRdir)
+
+## optional installation of a lintian silencer
+lintiandir := $(CURDIR)/debian/$(package)/usr/share/lintian/overrides
+
+## set built-time in DESCRIPTION time of created binary package based on stamp in changelog
+## cf discussion in http://bugs.debian.org/774031 --- and uncomment two assignments here
+##
+## extract built-timestamp from entry changelog and use as argument
+#builttime := $(shell dpkg-parsechangelog -l$(CURDIR)/debian/changelog | awk -F': ' '/Date/ {print $$2}')
+##
+#builttimeStamp := "--built-timestamp=\"$(builttime)\""
+##
+## else
+#builttimeStamp := ""
+#
+## Bug report #782764 with patch by Philipp Rinn building on what we had above
+## if no builttimeStamp is supplied, set built-time (to be set in DESCRIPTION)
+## to time of created source package based on stamp in changelog.
+## See discussion in http://bugs.debian.org/774031
+
+ifeq ($(builttimeStamp),)
+ builttime := $(shell dpkg-parsechangelog -l$(CURDIR)/debian/changelog | awk -F': ' '/Date/ {print $$2}')
+ builttimeStamp := "--built-timestamp=\"$(builttime)\""
+endif
+
+common-install-indep:: R_any_arch
+common-install-arch:: R_any_arch
+
+R_any_arch:
+ ## create the target directory
+ dh_installdirs $(debRdir)
+ ##
+ ## support ${R:Depends} via debian/${package}.substvars
+ echo "R:Depends=r-base-core (>= ${rversion}), ${rapiversion}" >> debian/$(package).substvars
+ ##
+ ## call R to install the sources we're looking at
+ ## use this inside xvfb-run if this wrapper is installed
+ if test -f /usr/bin/xvfb-run; then \
+ $(makeFlagsCall) xvfb-run -a -n 20 \
+ -s "${xvfbSrvArgs}" \
+ R CMD INSTALL -l $(debRlib) --clean \
+ $(extraInstallFlags) . \
+ $(builttimeStamp) \
+ ; \
+ else \
+ $(makeFlagsCall) R CMD INSTALL -l $(debRlib) \
+ --clean $(extraInstallFlags) . \
+ $(builttimeStamp) \
+ ; \
+ fi
+ ## remove extra files which are present in some packages
+ rm -vf $(debRlib)/R.css \
+ $(debRlib)/$(cranNameOrig)/COPYING \
+ $(debRlib)/$(cranNameOrig)/LICENSE.txt \
+ $(debRlib)/$(cranNameOrig)/LICENSE
+ ## if we have an overrides file for lintian, install it
+ if test -f debian/overrides; then \
+ install -d $(lintiandir) ; \
+ install -m 0644 debian/overrides \
+ $(lintiandir)/$(package); \
+ fi
+
+## clean target from patch by Steffen Moeller on 16 May 2009
+clean::
+ ## the re-invocation of a build process should not
+ ## leave a footprint in Debian's diff.gz.
+ if test -d src; then \
+ find src -regex ".*\.o" | \
+ xargs --no-run-if-empty -r rm; \
+ fi
+ rm -f config.log config.status
+ ## the configure file is provided by upstream but
+ ## could be recreated by a call to 'autoconf'.
+ #if [ -r configure.in ]; then \
+ # rm -f configure \
+ #fi
+ ##
+ # if [ -r src/Makevars.in ]; then \
+ # rm -f src/Makevars; \
+ # fi
+
diff --git a/debian/r-doc-html.doc-base.admin b/debian/r-doc-html.doc-base.admin
new file mode 100644
index 0000000..4d6f068
--- /dev/null
+++ b/debian/r-doc-html.doc-base.admin
@@ -0,0 +1,9 @@
+Document: r-admin
+Title: R Installation and Administration
+Author: R Core
+Abstract: This guide describes installation and administration for R.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-admin.html
+Files: /usr/share/doc/r-doc-html/manual/R-admin.html
diff --git a/debian/r-doc-html.doc-base.data b/debian/r-doc-html.doc-base.data
new file mode 100644
index 0000000..bd1b23e
--- /dev/null
+++ b/debian/r-doc-html.doc-base.data
@@ -0,0 +1,9 @@
+Document: r-data
+Title: R Data Import/Export
+Author: R Core
+Abstract: This is a guide to importing and exporting data to and from R.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-data.html
+Files: /usr/share/doc/r-doc-html/manual/R-data.html
diff --git a/debian/r-doc-html.doc-base.exts b/debian/r-doc-html.doc-base.exts
new file mode 100644
index 0000000..850f81e
--- /dev/null
+++ b/debian/r-doc-html.doc-base.exts
@@ -0,0 +1,11 @@
+Document: r-extensions
+Title: R Writing Extensions
+Author: R Core
+Abstract: This is a guide to extending R, describing the process of creating R
+ add-on packages, writing R documentation, R's system and foreign
+ language interfaces, and the R API.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-exts.html
+Files: /usr/share/doc/r-doc-html/manual/R-exts.html
diff --git a/debian/r-doc-html.doc-base.faq b/debian/r-doc-html.doc-base.faq
new file mode 100644
index 0000000..040b0a7
--- /dev/null
+++ b/debian/r-doc-html.doc-base.faq
@@ -0,0 +1,10 @@
+Document: r-faq
+Title: R Frequently Asked Questions
+Author: R Core
+Abstract: This document contains answers to some of the most frequently asked
+ questions about R.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-FAQ.html
+Files: /usr/share/doc/r-doc-html/manual/R-FAQ.html
diff --git a/debian/r-doc-html.doc-base.intro b/debian/r-doc-html.doc-base.intro
new file mode 100644
index 0000000..65324a1
--- /dev/null
+++ b/debian/r-doc-html.doc-base.intro
@@ -0,0 +1,17 @@
+Document: r-intro
+Title: R Introduction
+Author: R Core
+Abstract: This is an introduction to R ("GNU S"), a language and environment
+ for statistical computing and graphics. R is similar to the award-winning
+ S system, which was developed at Bell Laboratories by John Chambers et
+ al. It provides a wide variety of statistical and graphical techniques
+ (linear and nonlinear modelling, statistical tests, time series
+ analysis, classification, clustering, ...).
+ .
+ This manual provides information on data types, programming elements,
+ statistical modelling and graphics.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-intro.html
+Files: /usr/share/doc/r-doc-html/manual/R-intro.html
diff --git a/debian/r-doc-html.doc-base.ints b/debian/r-doc-html.doc-base.ints
new file mode 100644
index 0000000..4c9a57e
--- /dev/null
+++ b/debian/r-doc-html.doc-base.ints
@@ -0,0 +1,10 @@
+Document: r-ints
+Title: R Internals
+Author: R Core
+Abstract: This is a guide to the internal structures of R ("GNU S"), and the
+ coding standards for the core team working on R itself.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-ints.html
+Files: /usr/share/doc/r-doc-html/manual/R-ints.html
diff --git a/debian/r-doc-html.doc-base.lang b/debian/r-doc-html.doc-base.lang
new file mode 100644
index 0000000..5552465
--- /dev/null
+++ b/debian/r-doc-html.doc-base.lang
@@ -0,0 +1,11 @@
+Document: r-language
+Title: R Language Definition
+Author: R Core
+Abstract: This is an introduction to the R language, explaining evaluation,
+ parsing, object oriented programming, computing on the language, and
+ so forth.
+Section: Science/Data Analysis
+
+Format: HTML
+Index: /usr/share/doc/r-doc-html/manual/R-lang.html
+Files: /usr/share/doc/r-doc-html/manual/R-lang.html
diff --git a/debian/r-doc-html.files b/debian/r-doc-html.files
new file mode 100644
index 0000000..501a48f
--- /dev/null
+++ b/debian/r-doc-html.files
@@ -0,0 +1 @@
+usr/share/R/doc/manual/*.html
diff --git a/debian/r-doc-html.links b/debian/r-doc-html.links
new file mode 100644
index 0000000..72c5f3e
--- /dev/null
+++ b/debian/r-doc-html.links
@@ -0,0 +1,7 @@
+usr/share/R/doc/manual/R-admin.html usr/share/doc/r-doc-html/manual/R-admin.html
+usr/share/R/doc/manual/R-data.html usr/share/doc/r-doc-html/manual/R-data.html
+usr/share/R/doc/manual/R-exts.html usr/share/doc/r-doc-html/manual/R-exts.html
+usr/share/R/doc/manual/R-FAQ.html usr/share/doc/r-doc-html/manual/R-FAQ.html
+usr/share/R/doc/manual/R-intro.html usr/share/doc/r-doc-html/manual/R-intro.html
+usr/share/R/doc/manual/R-ints.html usr/share/doc/r-doc-html/manual/R-ints.html
+usr/share/R/doc/manual/R-lang.html usr/share/doc/r-doc-html/manual/R-lang.html
diff --git a/debian/r-doc-html.links.hidden b/debian/r-doc-html.links.hidden
new file mode 100644
index 0000000..ac34087
--- /dev/null
+++ b/debian/r-doc-html.links.hidden
@@ -0,0 +1 @@
+usr/share/doc/r-base usr/share/doc/r-doc-html
diff --git a/debian/r-doc-html.preinst b/debian/r-doc-html.preinst
new file mode 100644
index 0000000..608646b
--- /dev/null
+++ b/debian/r-doc-html.preinst
@@ -0,0 +1,32 @@
+#!/bin/sh
+#
+# preinst script for the Debian GNU/Linux r-doc-html package
+# This version written by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+#DEBHELPER#
+
+case "$1" in
+ install|upgrade)
+ # edd 05 Jul 2006 from with the /usr/lib -> /usr/share transition
+ # edd 12 Aug 2006 make sure it is a symlink and not a directory
+ # edd 29 Aug 2006 make sure $dir does not contain trailing slash
+ dir=/usr/share/doc/r-doc-html/manual
+ if [ -h $dir ]
+ then
+ echo "Removing symbolic link $dir"
+ rm $dir
+ fi
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ ;;
+esac
+
+exit 0
+
diff --git a/debian/r-doc-info.files b/debian/r-doc-info.files
new file mode 100644
index 0000000..6f7a137
--- /dev/null
+++ b/debian/r-doc-info.files
@@ -0,0 +1 @@
+usr/share/info/
diff --git a/debian/r-doc-pdf.files b/debian/r-doc-pdf.files
new file mode 100644
index 0000000..9cf6b46
--- /dev/null
+++ b/debian/r-doc-pdf.files
@@ -0,0 +1 @@
+usr/share/R/doc/manual/*.pdf
diff --git a/debian/r-doc-pdf.links b/debian/r-doc-pdf.links
new file mode 100644
index 0000000..cb7bb30
--- /dev/null
+++ b/debian/r-doc-pdf.links
@@ -0,0 +1,10 @@
+usr/share/R/doc/manual/R-admin.pdf usr/share/doc/r-doc-pdf/manual/R-admin.pdf
+usr/share/R/doc/manual/R-data.pdf usr/share/doc/r-doc-pdf/manual/R-data.pdf
+usr/share/R/doc/manual/R-exts.pdf usr/share/doc/r-doc-pdf/manual/R-exts.pdf
+usr/share/R/doc/manual/R-FAQ.pdf usr/share/doc/r-doc-pdf/manual/R-FAQ.pdf
+usr/share/R/doc/manual/R-intro.pdf usr/share/doc/r-doc-pdf/manual/R-intro.pdf
+usr/share/R/doc/manual/R-ints.pdf usr/share/doc/r-doc-pdf/manual/R-ints.pdf
+usr/share/R/doc/manual/R-lang.pdf usr/share/doc/r-doc-pdf/manual/R-lang.pdf
+usr/share/R/doc/manual/refman.pdf usr/share/doc/r-doc-pdf/manual/refman.pdf
+
+
diff --git a/debian/r-doc-pdf.links.hidden b/debian/r-doc-pdf.links.hidden
new file mode 100644
index 0000000..a5e9b2c
--- /dev/null
+++ b/debian/r-doc-pdf.links.hidden
@@ -0,0 +1 @@
+usr/share/doc/r-base usr/share/doc/r-doc-pdf
diff --git a/debian/r-doc-pdf.preinst b/debian/r-doc-pdf.preinst
new file mode 100644
index 0000000..dd5a53f
--- /dev/null
+++ b/debian/r-doc-pdf.preinst
@@ -0,0 +1,26 @@
+#! /bin/sh
+#
+# r-doc-pdf.preinst
+#
+# Written and GPL'ed by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+case "$1" in
+ install|upgrade)
+ # we want symlinks to r-base so old directories cannot exist
+ test -d /usr/share/doc/r-doc-pdf && rm -rf /usr/share/doc/r-doc-pdf
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 0
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/r-gnome.NEWS b/debian/r-gnome.NEWS
new file mode 100644
index 0000000..a810056
--- /dev/null
+++ b/debian/r-gnome.NEWS
@@ -0,0 +1,13 @@
+r-gnome (2.0.1.alpha.20050403-1) experimental; urgency=low
+
+ * The experimental and incomplete Gnome UI is no longer included
+ in the upstream R sources as of the R 2.1.0 release.
+
+ Hence, this Debian package is now an empty transition package
+ which will eventually disappear.
+
+ The old code for the R Gnome frontend is still available via
+ svn co https://svn.r-project.org/R-packages/trunk/gnomeGUI
+
+ -- Dirk Eddelbuettel <edd@debian.org> Sun, 3 Apr 2005 16:04:29 -0500
+
diff --git a/debian/r-gnome.links b/debian/r-gnome.links
new file mode 100644
index 0000000..646c5d5
--- /dev/null
+++ b/debian/r-gnome.links
@@ -0,0 +1 @@
+usr/share/doc/r-base-core usr/share/doc/r-gnome
diff --git a/debian/r-gnome.lintian b/debian/r-gnome.lintian
new file mode 100644
index 0000000..6ef26a4
--- /dev/null
+++ b/debian/r-gnome.lintian
@@ -0,0 +1 @@
+r-gnome: menu-command-not-in-package /usr/lib/menu/r-gnome:4 /usr/bin/R
diff --git a/debian/r-gnome.menu b/debian/r-gnome.menu
new file mode 100644
index 0000000..f139ee2
--- /dev/null
+++ b/debian/r-gnome.menu
@@ -0,0 +1,4 @@
+?package(r-gnome):needs="x11" \
+ section="Apps/Math" \
+ title="GNU R (Gnome)" \
+ command="/usr/bin/R --gui=GNOME --no-save"
diff --git a/debian/r-gnome.preinst b/debian/r-gnome.preinst
new file mode 100644
index 0000000..06fc5f8
--- /dev/null
+++ b/debian/r-gnome.preinst
@@ -0,0 +1,26 @@
+#! /bin/sh
+#
+# r-gnome.preinst
+#
+# Written and GPL'ed by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+case "$1" in
+ install|upgrade)
+ # we want symlinks to r-base so old directories cannot exist
+ test -d /usr/share/doc/r-gnome && rm -rf /usr/share/doc/r-gnome
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 0
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/r-mathlib.dirs b/debian/r-mathlib.dirs
new file mode 100644
index 0000000..1da8fba
--- /dev/null
+++ b/debian/r-mathlib.dirs
@@ -0,0 +1 @@
+usr/share/lintian/overrides
diff --git a/debian/r-mathlib.files b/debian/r-mathlib.files
new file mode 100644
index 0000000..8dadadd
--- /dev/null
+++ b/debian/r-mathlib.files
@@ -0,0 +1,3 @@
+usr/lib/libRmath*
+usr/lib/pkgconfig/libRmath.pc
+
diff --git a/debian/r-mathlib.links.hidden b/debian/r-mathlib.links.hidden
new file mode 100644
index 0000000..2b50f88
--- /dev/null
+++ b/debian/r-mathlib.links.hidden
@@ -0,0 +1 @@
+usr/share/doc/r-base-core usr/share/doc/r-mathlib
diff --git a/debian/r-mathlib.lintian b/debian/r-mathlib.lintian
new file mode 100644
index 0000000..422ac56
--- /dev/null
+++ b/debian/r-mathlib.lintian
@@ -0,0 +1,5 @@
+r-mathlib: non-dev-pkg-with-shlib-symlink usr/lib/libRmath.so.1.0.0 usr/lib/libRmath.so
+r-mathlib: missing-depends-line
+r-mathlib: package-name-doesnt-match-sonames libRmath1
+r-mathlib: hardening-no-relro usr/lib/libRmath.so.1.0.0
+r-mathlib: maintscript-calls-ldconfig postinst
diff --git a/debian/r-mathlib.postinst b/debian/r-mathlib.postinst
new file mode 100644
index 0000000..6a20f8d
--- /dev/null
+++ b/debian/r-mathlib.postinst
@@ -0,0 +1,27 @@
+##!/bin/sh -e
+#
+# postinst script for the Debian GNU/Linux r-mathlib package
+#
+# Written and GPL'ed by Dirk Eddelbuettel <edd@debian.org>
+
+#DEBHELPER#
+
+ldconfig
+
+case "$1" in
+
+ configure)
+ ;;
+
+ upgrade|abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ ;;
+
+esac
+
+exit 0
+
+
diff --git a/debian/r-mathlib.shlibs.hidden b/debian/r-mathlib.shlibs.hidden
new file mode 100644
index 0000000..9f0532f
--- /dev/null
+++ b/debian/r-mathlib.shlibs.hidden
@@ -0,0 +1 @@
+libRmath 1 r-mathlib (>= 2.0)
diff --git a/debian/r-recommended.dirs b/debian/r-recommended.dirs
new file mode 100644
index 0000000..a66cdf1
--- /dev/null
+++ b/debian/r-recommended.dirs
@@ -0,0 +1,2 @@
+usr/lib/R/library
+usr/share/lintian/overrides
diff --git a/debian/r-recommended.files b/debian/r-recommended.files
new file mode 100644
index 0000000..83e2770
--- /dev/null
+++ b/debian/r-recommended.files
@@ -0,0 +1,14 @@
+usr/lib/R/library/KernSmooth/
+usr/lib/R/library/MASS/
+usr/lib/R/library/class/
+usr/lib/R/library/nnet/
+usr/lib/R/library/spatial/
+usr/lib/R/library/boot/
+usr/lib/R/library/cluster/
+usr/lib/R/library/foreign/
+usr/lib/R/library/grid/
+usr/lib/R/library/lattice/
+usr/lib/R/library/mgcv/
+usr/lib/R/library/nlme/
+usr/lib/R/library/rpart/
+usr/lib/R/library/survival/
diff --git a/debian/r-recommended.links b/debian/r-recommended.links
new file mode 100644
index 0000000..bd86d0e
--- /dev/null
+++ b/debian/r-recommended.links
@@ -0,0 +1 @@
+usr/share/doc/r-base-core usr/share/doc/r-recommended
diff --git a/debian/r-recommended.lintian b/debian/r-recommended.lintian
new file mode 100644
index 0000000..13289ad
--- /dev/null
+++ b/debian/r-recommended.lintian
@@ -0,0 +1,8 @@
+r-recommended: extra-license-file usr/lib/R/library/MASS/LICENCE
+r-recommended: extra-license-file usr/lib/R/library/class/LICENCE
+r-recommended: extra-license-file usr/lib/R/library/nnet/LICENCE
+r-recommended: extra-license-file usr/lib/R/library/spatial/LICENCE
+r-recommended: extra-license-file usr/lib/R/library/nlme/COPYING
+r-recommended: extra-license-file usr/lib/R/library/survival/COPYING
+r-recommended: package-contains-empty-directory usr/lib/R/library/
+r-recommended: package-contains-empty-directory usr/share/lintian/overrides/
diff --git a/debian/r-recommended.preinst b/debian/r-recommended.preinst
new file mode 100644
index 0000000..170ae03
--- /dev/null
+++ b/debian/r-recommended.preinst
@@ -0,0 +1,26 @@
+#! /bin/sh
+#
+# r-recommended.preinst
+#
+# Written and GPL'ed by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+case "$1" in
+ install|upgrade)
+ # we want symlinks to r-base so old directories cannot exist
+ test -d /usr/share/doc/r-recommended && rm -rf /usr/share/doc/r-recommended
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 0
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/reproducibility-patch/R-set-buildstamp-via-INSTALL.patch b/debian/reproducibility-patch/R-set-buildstamp-via-INSTALL.patch
new file mode 100644
index 0000000..de058cf
--- /dev/null
+++ b/debian/reproducibility-patch/R-set-buildstamp-via-INSTALL.patch
@@ -0,0 +1,63 @@
+Index: src/library/tools/R/admin.R
+===================================================================
+--- src/library/tools/R/admin.R (revision 67410)
++++ src/library/tools/R/admin.R (working copy)
+@@ -21,7 +21,7 @@
+
+ ## called from basepkg.mk and .install_packages
+ .install_package_description <-
+-function(dir, outDir)
++function(dir, outDir, builtStamp=character())
+ {
+ ## Function for taking the DESCRIPTION package meta-information,
+ ## checking/validating it, and installing it with the 'Built:'
+@@ -66,8 +66,9 @@
+ "; ",
+ if(dir.exists(file.path(dir, "src"))) OStype else "",
+ "; ",
++ ## Some build systems want to supply a package-build timestamp for reproducibility
+ ## Prefer date in ISO 8601 format, UTC.
+- format(Sys.time(), tz = "UTC", usetz = TRUE),
++ if (length(builtStamp)==0) format(Sys.time(), tz = "UTC", usetz = TRUE) else builtStamp,
+ ## Sys.time(),
+ "; ",
+ .OStype())
+Index: src/library/tools/R/install.R
+===================================================================
+--- src/library/tools/R/install.R (revision 67410)
++++ src/library/tools/R/install.R (working copy)
+@@ -180,6 +180,8 @@
+ " --configure-vars=VARS",
+ " set variables for the configure scripts (if any)",
+ " --dsym (OS X only) generate dSYM directory",
++ " --built-timestamp=STAMP",
++ " set timestamp for Built: entry in DESCRIPTION",
+ "\nand on Windows only",
+ " --force-biarch attempt to build both architectures",
+ " even if there is a non-empty configure.win",
+@@ -652,7 +654,7 @@
+ Sys.chmod(file.path(instdir, f), fmode)
+ }
+
+- res <- try(.install_package_description('.', instdir))
++ res <- try(.install_package_description('.', instdir, built_stamp))
+ if (inherits(res, "try-error"))
+ pkgerrmsg("installing package DESCRIPTION failed", pkg_name)
+ if (!file.exists(namespace <- file.path(instdir, "NAMESPACE")) ) {
+@@ -1274,6 +1276,7 @@
+ resave_data <- FALSE
+ compact_docs <- FALSE
+ keep.source <- getOption("keep.source.pkgs")
++ built_stamp <- character()
+
+ install_libs <- TRUE
+ install_R <- TRUE
+@@ -1401,6 +1404,8 @@
+ byte_compile <- FALSE
+ } else if (a == "--dsym") {
+ dsym <- TRUE
++ } else if (substr(a, 1, 18) == "--built-timestamp=") {
++ built_stamp <- substr(a, 19, 1000)
+ } else if (substr(a, 1, 1) == "-") {
+ message("Warning: unknown option ", sQuote(a), domain = NA)
+ } else pkgs <- c(pkgs, a)
diff --git a/debian/reproducibility-patch/R-set-buildstamp-via-MAKE-env-var.patch b/debian/reproducibility-patch/R-set-buildstamp-via-MAKE-env-var.patch
new file mode 100644
index 0000000..b77bcc5
--- /dev/null
+++ b/debian/reproducibility-patch/R-set-buildstamp-via-MAKE-env-var.patch
@@ -0,0 +1,32 @@
+Index: share/make/basepkg.mk
+===================================================================
+--- share/make/basepkg.mk (revision 67410)
++++ share/make/basepkg.mk (working copy)
+@@ -85,15 +85,25 @@
+
+ mkdesc:
+ @if test -f DESCRIPTION; then \
++ if test "$(PKG_BUILT_STAMP)" != ""; then \
++ $(ECHO) "tools:::.install_package_description('.', '$(top_builddir)/library/${pkg}', '$(PKG_BUILT_STAMP)')" | \
++ R_DEFAULT_PACKAGES=NULL $(R_EXE) > /dev/null ; \
++ else \
+ $(ECHO) "tools:::.install_package_description('.', '$(top_builddir)/library/${pkg}')" | \
+ R_DEFAULT_PACKAGES=NULL $(R_EXE) > /dev/null ; \
++ fi; \
+ fi
+
+ ## for base and tools
+ mkdesc2:
+ @$(INSTALL_DATA) DESCRIPTION $(top_builddir)/library/$(pkg)
+- @$(ECHO) "Built: R $(VERSION); ; `TZ=UTC date`; $(R_OSTYPE)" \
+- >> $(top_builddir)/library/$(pkg)/DESCRIPTION
++ @if test "$(PKG_BUILT_STAMP)" != ""; then \
++ $(ECHO) "Built: R $(VERSION); ; $(PKG_BUILT_STAMP); $(R_OSTYPE)" \
++ >> $(top_builddir)/library/$(pkg)/DESCRIPTION ; \
++ else \
++ $(ECHO) "Built: R $(VERSION); ; `TZ=UTC date`; $(R_OSTYPE)" \
++ >> $(top_builddir)/library/$(pkg)/DESCRIPTION ; \
++ fi
+
+ mkdemos:
+ @$(ECHO) "tools:::.install_package_demos('$(srcdir)', '$(top_builddir)/library/$(pkg)')" | \
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..047edc2
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,741 @@
+#!/usr/bin/make -f
+# debian/rules file for the Debian GNU/Linux r-base package
+# Copyright 1997-2003 Douglas Bates <bates@stat.wisc.edu>
+# Copyright 1998-2016 Dirk Eddelbuettel <edd@debian.org>
+#
+# $Id: rules,v 1.3 2007/05/06 17:13:23 edd Exp edd $
+
+corepackage = r-base-core
+devpackage = r-base-dev
+#latexpackage = r-base-latex
+pdfpackage = r-doc-pdf
+htmlpackage = r-doc-html
+nmathpackage = r-mathlib
+infopackage = r-doc-info
+recdpackage = r-recommended
+dbugpackage = r-base-core-dbg
+
+# for the standalone library, no sonames are assigned in the upstream Makefiles
+somaj = 1
+somin = 0
+sorel = 0
+libver = $(somaj).$(somin).$(sorel)
+
+debbase := $(CURDIR)/debian
+debtmp := $(debbase)/$(corepackage)
+debdoc := $(debbase)/$(corepackage)/usr/share/doc/$(corepackage)
+debmat := $(debbase)/$(nmathpackage)
+debetc := $(debbase)/$(corepackage)/usr/lib/R/etc
+debinf := $(debbase)/$(infopackage)
+debcnf := $(debbase)/$(corepackage)/etc/R
+
+## edd 24 Oct 2005 use DEB_BUILD_GNU_CPU, not DEB_BUILD_GNU_TYPE
+## updated rules throughout
+arch := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
+buildarch := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+## edd 26 Jul 2013 also use DEB_HOST_ARCH_OS to catch kFreeBSD
+buildos := $(shell dpkg-architecture -qDEB_HOST_ARCH_OS)
+#export DH_VERBOSE = 1
+
+# edd 15 Aug 2001 default to blas, atlas can override it
+#atlas = --with-blas=blas
+# dmb 04 Apr 2003 better to use no specify blas
+# atlas = --with-blas
+# edd 28 Apr 2003 try configuring with atlas
+# atlas = --with-blas=atlas
+# edd 16 Oct 2003 back to older default
+#atlas = --with-blas=blas
+# edd 26 Feb 2004 point to refblas3
+#atlas = --with-blas=-lblas-3
+# edd 05 Feb 2008 default blas
+atlas = --with-blas
+
+# edd 08 Mar 2003 use the new lapack feature
+# edd 27 Apr 2003 Set this to =no as we currently see numerical errors
+#lapack = --with-lapack=no
+# edd 26 Feb 2004 point to lapack3
+#lapack = --with-lapack=-llapack-3
+# edd 13 Oct 2004 Set this once again to =no as we still see numerical errors
+#lapack = --with-lapack=no
+# edd 05 Feb 2008 switched back
+# edd 05 Feb 2008 oh, no switch back to internal lapack -- see #464833
+#lapack = --with-lapack=no
+# edd 05 Mar 2008 with lapack as we can now use lapack 3.1 in unstable
+lapack = --with-lapack
+
+# edd 02 Sep 2001 default to g77 but let m68k use f2c
+# edd 06 Mar 2003 enforce 3.2 versions explicitly
+# so that on testing we will pick them over 2.95
+# edd 07 Jun 2003 let's fall back to the default compilers
+# edd 08 Sep 2005 real defaults, i.e. remove -3.4 strings
+# edd 03 Apr 2006 switch to gfortran
+# edd 04 Apr 2006 use optimflags, build per-compiler flags later
+# edd 26 Jun 2007 need 4.2 for fortran linking
+# edd 26 Nov 2007 4.2 is now default, so no longer set -4.2 explictly; also add f95compiler
+# edd 11 Oct 2011 setting -std=gnu99 with compiler (thanks, Kurt Hornik)
+fortrancompiler = F77=gfortran
+f95compiler = gfortran
+# edd 10 Jan 2016 mips currently needs gcc-4.9 (cf #810357) and big thanks to Sébastien Villemot
+# edd 12 Apr 2016 mips treatment removed again after kernel fix on
+#ifeq ($(arch),mips)
+#compiler = "gcc-4.9 -std=gnu99"
+#else
+compiler = "gcc -std=gnu99"
+#endif
+cxxcompiler = g++
+
+# edd 31 Mar 2014
+#optimflags = -O3 -pipe
+optimflags = $(shell dpkg-buildflags --get CFLAGS)
+# edd 08 Apr 2014 add CPPFLAGS
+optimflags += $(shell dpkg-buildflags --get CPPFLAGS)
+
+# edd 22 Apr 2012 gcc-4.7 needs -O2 to build R (also #67359)
+ifneq "$(shell gcc --version | head -1 | cut -d' ' -f4 | grep '^4.7')" ""
+optimflags = -O2 -pipe
+endif
+
+# edd 04 Sep 2001 default compiler flags, lowered for m68k
+#compilerflags = -O2
+# m68k barks when using g77, and when gcc use -O2
+# edd 26 Nov 2002 switched back to g77
+# edd 02 Jun 2003 switched back
+# cts 04 Jun 2003 use -O1 on m68k
+#ifeq ($(arch),m68k)
+#fortrancompiler = F2C=f2c
+#compilerflags = -O1
+#endif
+
+# edd 14 Nov 2003 turn blas off on arm
+# edd 12 May 2010 no longer needed -- thx to Modestas Vainius
+#ifeq ($(arch),arm)
+#atlas = --without-blas
+#endif
+
+## edd 09 Nov 2001 ia64 needs gcc-3.0, hppa gets it by default
+#ifeq ($(arch),ia64)
+#fortrancompiler = F77=g77-3.0
+#compiler = gcc-3.0
+#cxxcompiler = g++-3.0
+#compilerflags = -O2
+#endif
+
+## lamont@debian.org 06 Dec 2001 hppa needs -ffunction-sections
+ifeq ($(arch),hppa)
+optimflags = -O2 -ffunction-sections
+endif
+
+## edd 20 Jun 2002 no optimisation or debugging on baby systems
+## edd 02 Jun 2003 use this on arm only
+## edd 12 May 2010 no longer use it on arm either -- thx Modestas
+## edd 04 Aug 2010 on mips and mipsel, don't use -g
+## edd 10 Jan 2016 turn all off again
+##ifneq "$(findstring $(arch), m68k arm)" ""
+#ifneq "$(findstring $(arch), arm)" ""
+#ifneq "$(findstring $(arch), mips mipsel)" ""
+#optimflags = -g0
+##optimflags = -O0 -g0
+#endif
+
+## edd 04 Apr 2009 Alpha dies on deriv.c, trying will less optimisation
+## edd 16 Apr 2009 commented-out as Kurt Roeckx applied a gcc patch
+#ifeq ($(arch),alpha)
+#optimflags = -O2 -g0
+#endif
+
+## edd 09 Apr 2006 per patch from Andreas Jochens in #361604
+ifeq ($(arch),powerpc64)
+optimflags += -mminimal-toc
+endif
+
+## edd 26 Jul 2013 kFreeBSD wants -O2 per #714506
+ifeq ($(buildos),kfreebsd)
+optimflags = -O2 -pipe
+endif
+
+
+## edd 04 Apr 2006 generalize from old compilerflags to per-compiler
+## edd 11 Oct 2011 -std=gnu goes to CC (thanks to Kurt Hornik)
+cflags = $(optimflags)
+cxxflags = $(optimflags)
+## edd 31 Mar 2014 with thanks to Julian Gilbey in #726913
+#fcflags = $(optimflags)
+fcflags = $(shell dpkg-buildflags --get FFLAGS)
+
+## edd 17 Sep 2006 suggested by Brian Ripley in email dated 15 Sep 2006
+#ldflags = -Wl,-O1,-Bdirect,--hash-style=both
+#ldflags = -Wl,-O1
+## edd 06 May 2007 try it
+## edd 05 Feb 2008 still no go under gcc 4.3
+#ldflags = -Wl,-O1,-Bdirect,--hash-style=both
+## edd 31 Mar 2014
+ldflags = $(shell dpkg-buildflags --get LDFLAGS)
+
+## edd 16 Apr 2008 add -g to optim flags to allow for -dbg package
+optimflags += -g
+
+## 12 Jan 2015
+## Support for #774031 uncomment the two assignment to pass a non-empty string for this to hold
+#builttime := $(shell dpkg-parsechangelog -l$(CURDIR)/debian/changelog | awk -F': ' '/Date/ {print $$2}')
+#builttimestamp := "$(builttime)"
+buildtimestamp := ""
+
+#arch = kfreebsd-amd64
+maketest:
+ @echo "Hi $(arch)"
+ @echo "$(findstring $(arch), i486 hppa arm)"
+ifeq "$(findstring $(arch), kfreebsd-amd64 x86_64 hppa arm)" ""
+ @echo "**** TRUE if the arch is NOT in the list as !find == '' ***"
+endif
+ifneq "$(findstring $(arch), kfreebsd-amd64 x86_64 i486 hppa arm)" ""
+ @echo "**** TRUE if the arch is in list as find != '' is TRUE ***"
+endif
+ @echo Bye
+
+get-orig-source: upstream
+upstream:
+ #links http://cran.us.r-project.org/src/base
+ links http://cran.r-project.org/src/base/?M=D
+
+upstreamdevel:
+ links ftp://ftp.stat.math.ethz.ch/Software/R
+ #links http://cran.us.r-project.org/src/base
+ #rsync -vaC rsync.r-project.org::r-devel .
+
+prerelease:
+ links http://cran.r-project.org/src/base-prerelease
+
+denmark:
+ links http://www.biostat.ku.dk/~pd/R-release
+
+
+## edd 24 Oct 2003 build is invoked by the buildd, so we would prefer to
+## not imply build-indep; unfortunately R does not build
+## properly without it, so we have to stick with it
+## edd 15 Jan 2004 trying again on build only build: build-arch build-indep
+## the main hook is to then have binary depend on both
+## binary-arch and binary-indep, and those on their builds
+build: build-arch
+
+build-arch: make-arch
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+build-arch: check
+endif
+
+build-indep: make-indep
+
+configure: configure-stamp
+configure-stamp:
+ @echo "*** configure ***"
+
+ # we have to disable use of the expanded R_LD_LIBRARY_PATH as it
+ # conflicts with Debian's Atlas-can-replace-Blas scheme
+ # so set R_LD_LIBRARY_PATH to the minimal value R_HOME/bin
+ # and discard what configure finds for it on this machine
+ ## edd 06 May 2007 no longer used in R.sh.in
+ #perl -p -i -e 's|:\@R_LD_LIBRARY_PATH\@||' src/scripts/R.sh.in
+
+ # edd 15 Dec 2009 the sh4 architecture needs newer configure than
+ # R Core uses, so following Kurt's recommendation to
+ # simply re-run configure here
+ # edd 03 Apr 2010 added automake
+ # nope, commented both out
+ #automake
+ #autoconf
+
+ dh_testdir
+ R_TEXI2DVICMD=emulation \
+ R_PAPERSIZE=letter \
+ R_BROWSER=xdg-open \
+ R_GZIPCMD="/bin/gzip -n" \
+ PAGER=/usr/bin/pager \
+ PERL=/usr/bin/perl \
+ JAVA_HOME=/usr/lib/jvm/default-java \
+ R_UNZIPCMD=/usr/bin/unzip \
+ R_ZIPCMD=/usr/bin/zip \
+ R_PRINTCMD=/usr/bin/lpr \
+ LIBnn=lib \
+ AWK=/usr/bin/awk \
+ CC=$(compiler) \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ FC=${f95compiler} \
+ CFLAGS="$(cflags)" \
+ CXXFLAGS="$(cxxflags)" \
+ FFLAGS="$(fcflags)" \
+ FCFLAGS="$(fcflags)" \
+ CPPFLAGS= \
+ LDFLAGS="$(ldflags)" \
+ FLIBS= \
+ rsharedir=/usr/share/R/share \
+ rincludedir=/usr/share/R/include \
+ rdocdir=/usr/share/R/doc \
+ ./configure --prefix=/usr \
+ --with-cairo \
+ --with-jpeglib \
+ --with-readline \
+ --with-tcltk \
+ --with-system-bzlib \
+ --with-system-pcre \
+ --with-system-zlib \
+ --mandir=/usr/share/man \
+ --infodir=/usr/share/info \
+ --datadir=/usr/share/R/share \
+ --includedir=/usr/share/R/include \
+ $(atlas) \
+ $(lapack) \
+ --enable-R-profiling \
+ --enable-R-shlib \
+ --enable-memory-profiling \
+ --without-recommended-packages \
+ --build $(buildarch)
+
+ ## Old options now ignore: --with-pango, --with-png, --without-gnome
+
+ touch configure-stamp
+
+make-arch: make-arch-stamp
+make-arch-stamp: configure-stamp
+ @echo "*** make-arch ***"
+ $(MAKE) CFLAGS="$(cflags)" \
+ CXXFLAGS="$(cxxflags)" \
+ FFLAGS="$(fcflags)" \
+ FCFLAGS="$(fcflags)" \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ LDFLAGS="$(ldflags)" \
+ PKG_BUILT_STAMP="$(buildtimestamp)" \
+ R_GZIPCMD="/bin/gzip -n" \
+ R
+
+ # the top-level 'make stamp-recommended' target implies 'make docs'
+ # which (for the buildds) implies a lot of time wasted generating
+ # output we already take from the initial i386 build
+# $(MAKE) CFLAGS="$(compilerflags)" \
+# CXXFLAGS="$(compilerflags)" \
+# FFLAGS="$(compilerflags)" \
+# CC=${compiler} \
+# CXX=${cxxcompiler} \
+# ${fortrancompiler} \
+# stamp-recommended
+
+ # make standalone math lib
+ (cd src/nmath/standalone; \
+ $(MAKE) CFLAGS="$(cflags) -D_REENTRANT" \
+ CXXFLAGS="$(cxxflags) -D_REENTRANT" \
+ FFLAGS="$(fcflags) -D_REENTRANT" \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ R_GZIPCMD="/bin/gzip -n" \
+ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.$(somaj) \
+ shared static )
+
+ # edd 25 Jan 2004 make install needs html docs
+ # edd 03 Feb 2004 new test, try without
+ #make docs
+ # edd 15 Jan 2004 make install needs html docs
+ # edd 25 Jan 2004 not needed as we have 'make docs'
+ ## make html
+ R_GZIPCMD="/bin/gzip -n" \
+ $(MAKE) docs R_CMD_BUILD_HELP_OPTS="--txt --example"
+
+ # edd 26 Mar 2013
+ $(MAKE) javaconf
+
+ touch make-arch-stamp
+
+make-indep: make-indep-stamp
+make-indep-stamp: configure-stamp
+ @echo "*** make-indep ***"
+ ## edd 12 Jan 2004 uncommenting 'make docs' to split binary all/any
+ ## now that recommended packages aren't made
+ ## edd 25 Jan 2004 make docs and make html are made in make-arch
+ ## edd 05 Feb 2004 finally, this works in pre-1.9.0 with Kurt's
+ ## R_CMD_BUILD_HELP_OPTS
+ $(MAKE) -k docs
+ (cd doc/manual && $(MAKE) html)
+# $(MAKE) html
+# $(MAKE) help
+ $(MAKE) info
+ (cd doc/manual && \
+ $(MAKE) refman.pdf R-admin.pdf R-data.pdf R-exts.pdf \
+ R-FAQ.pdf R-intro.pdf R-ints.pdf R-lang.pdf)
+ $(MAKE) -k pdf
+ $(MAKE) -k vignettes
+ touch make-indep-stamp
+
+make: make-stamp
+make-stamp: make-arch make-indep
+
+#check: make-arch check-stamp
+check: make-stamp check-stamp
+check-stamp:
+ @echo "*** check ***"
+#ifneq ($(arch),arm)
+## edd 11 Oct 2005 also disable on hppa
+## edd 15 Apr 2008 call inside of xvfb-run for virtual x11, and switch to check-all
+ifeq "$(findstring $(arch), hppa arm)" ""
+## edd 29 Jul 2013 also disable on kFreeBSD
+ifneq ($(buildos),kfreebsd)
+ -xvfb-run make check-all
+endif
+endif
+ touch check-stamp
+
+clean:
+ @echo "*** clean ***"
+ dh_testdir
+ dh_testroot
+ rm -f configure-stamp \
+ build-stamp build-indep-stamp build-arch-stamp \
+ make-stamp make-arch-stamp make-indep-stamp \
+ install-indep-stamp install-arch-stamp \
+ check-stamp
+ [ ! -f Makefile ] || $(MAKE) distclean
+ -rm -f `find . -name "*~"`
+ -rm -rf debian/tmp debian/files* core debian/substvars
+ -rm -f doc/html/function.html doc/html/packages.html
+ -rm -f modules/*.so src/unix/Rscript
+ # left over in CVS from r-base --> r-base-core transition
+ #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
+ # r-base.menu r-base.postinst)
+ dh_clean
+
+install: install-arch install-indep
+
+install-arch: build-arch install-arch-stamp
+install-arch-stamp:
+ @echo "*** install-arch ***"
+ dh_testdir
+ dh_testroot
+ dh_prep -a
+ dh_installdirs -A
+ @echo $(debtmp)
+
+ $(MAKE) DESTDIR=$(debtmp) install
+
+ # edd 16 Apr 2008 make Rscript _again_ as the build is broken
+ # and we need an explicit RHOME
+ (cd src/unix; \
+ rm -vf Rscript $(debtmp)/usr/bin/Rscript; \
+ $(MAKE) CFLAGS="$(cflags) -D_REENTRANT" \
+ CXXFLAGS="$(cxxflags) -D_REENTRANT" \
+ FFLAGS="$(fcflags) -D_REENTRANT" \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ RHOME=/usr/lib/R \
+ DESTDIR=$(debtmp) \
+ install-Rscript )
+ #ls -ltr $(debtmp)/usr/bin/
+ #strings src/unix/Rscript
+ cp -vax src/unix/Rscript $(debtmp)/usr/bin/
+ #ls -ltr $(debtmp)/usr/bin/
+ #strings $(debtmp)/usr/bin/Rscript
+
+ (cd src/nmath/standalone; \
+ $(MAKE) DESTDIR=$(debtmp) install )
+
+ # fix permissions (Lintian)
+ # edd 15 Jan 2006 now under /usr/share/R
+ # edd 13 Oct 2009 no longer have help-{links,print}.sh
+ chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh
+# $(debtmp)/usr/share/R/share/sh/help-links.sh \
+# $(debtmp)/usr/share/R/share/sh/help-print.sh
+
+ # remove unneeded license file, but link them back
+ rm -v $(debtmp)/usr/lib/R/COPYING
+ (cd $(debtmp)/usr/lib/R/; \
+ ln -s ../../share/common-licenses/GPL-2 COPYING)
+ rm -v $(debtmp)/usr/share/R/doc/COPYING
+ (cd $(debtmp)/usr/share/R/doc; \
+ ln -s ../../../share/common-licenses/GPL-2 COPYING)
+
+ # edd 15 Jul 2002 reduce compile load on small machines
+#ifneq "$(findstring $(arch), m68k arm)" ""
+# perl -p -i -e 's/-g -O2/-g0 -O0/g' $(debtmp)/usr/lib/R/etc/Makeconf
+#endif
+
+ # edd 10 Jan 2003 fix Perl interpreter path
+ # edd 05 May 2005 no longer needed
+# (cd $(debtmp)/usr/lib/R/bin; \
+# for file in Rdconv Rprof Sd2Rd build check; do \
+# perl -p -i -e "s|/usr/local/bin/perl|/usr/bin/perl|" \
+# $${file}; \
+# done)
+
+ # edd 25 Sep 2005 link TeX files into texmf
+ # edd 03 Oct 2006 use link into /usr/share/, not /usr/lib/
+ (cd $(debtmp)/usr/share/texmf/tex/latex && \
+ ln -s ../../../R/share/texmf R)
+
+ # that being done, now install in different sub-packages
+
+ # move files for r-recommended
+
+ # move the html manual files in r-doc-html.files into r-doc-html
+ # these get built in make-arch too ...
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
+
+ # move files for r-base-html
+ dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-html
+ # move files for r-base-latex
+ dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-latex
+
+ make prefix=$(debtmp)/usr \
+ rdocdir=$(debtmp)/usr/share/R/doc \
+ install-pdf
+
+ # the indep package r-doc-info is made now
+ make prefix=$(debtmp)/usr \
+ infodir=$(debtmp)/usr/share/info install-info
+
+ # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(pdfpackage)
+
+ # move the html manual files in r-doc-html.files into r-doc-html
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
+
+ touch install-indep-stamp
+ # edd 06 Dec 2006 lintian wants them compressed with -9, and R
+ # seems to pre-zip them lower
+ gunzip -9v $(debtmp)/usr/share/info/*.gz
+ # move files for r-doc-info
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(infopackage)
+ # deal with stupid automake / install-info issue (cf #235713)
+ rm -vf $(debinf)/usr/share/info/dir \
+ $(debinf)/usr/share/info/dir.old
+
+ # move all the rest into r-base-core
+ # edd 10 Sep 2005 no longer needed as we install into r-base-core
+ # dh_movefiles -p$(corepackage)
+
+ # for the standalone library package, move the two libs
+ # as 'make install' ignores these, we have to do it by hand
+ dh_installdirs -p$(nmathpackage) usr/include usr/lib \
+ usr/share/lintian/overrides \
+ usr/lib/pkgconfig
+ # move the libraries made and installed by R, and the pkgconfig file
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(nmathpackage)
+ # move the library to a lib*.so.major.0.0, then link
+ (cd $(debmat)/usr/lib; \
+ ls -l ; \
+ mv -v libRmath.so libRmath.so.$(libver); \
+ ln -sv libRmath.so.$(libver) libRmath.so.$(somaj); \
+ ln -sv libRmath.so.$(somaj) libRmath.so)
+
+ # and create a link for Rmath.h
+ # rather copy directly into the more independent package r-mathlib
+ install -m 0644 src/include/Rmath.h \
+ $(debmat)/usr/include
+
+ # now deal with $R_HOME/etc <--> /etc/R
+ # edd 03 Apr 2003 patch Renviron for new R_LIBS standard
+ # edd 24 Apr 2004 patch Renviron for R_PAPERSIZE (bug #245525)
+ # edd 16 Jun 2004 nope, doesn't work
+ # edd 09 Apr 2005 also move the new file repositories to /etc/R
+ # edd 24 Sep 2006 idem for ldpaths
+ # edd 21 Jun 2008 do not move Renviron to /etc/R as ucf will handle this,
+ # but still provide the softlink from /etc/R here
+ # edd 13 Sep 2008 install Rprofile.site and Renviron.site and link back
+ install -m 0644 debian/Rprofile.site $(debcnf)
+ install -m 0644 debian/Renviron.site $(debcnf)
+ (cd $(debetc); \
+ cat $(debbase)/Renviron-R_LIBS.patch | patch --verbose; \
+ mv Makeconf repositories ldpaths ../../../../etc/R/; \
+ mv Renviron Renviron.ucf; \
+ ln -s /etc/R/Makeconf .; \
+ ln -s /etc/R/Renviron .; \
+ ln -s /etc/R/Renviron.site .; \
+ ln -s /etc/R/Rprofile.site .; \
+ ln -s /etc/R/ldpaths .; \
+ ln -s /etc/R/repositories . )
+# cat $(debbase)/Renviron-R_PAPERSIZE.patch | patch --verbose;
+
+ # deal with build.help.pl's --htmllists argument
+ # edd 29 Jan 2009 Not needed as of R 2.9.0
+ #(cd $(debtmp)/usr/share/R/share/perl; \
+ # cat $(debbase)/build-help.pl.patch | patch --verbose )
+
+ # edd 28 Sep 2006 patch javareconf to modify in /etc/R
+ # edd 24 Feb 2013 disabled for R 2.15.3
+ #(cd $(debtmp)/usr/lib/R/bin; \
+ # cat $(debbase)/javareconf.patch | patch --verbose )
+
+ # edd 24 Jan 2006 deal with old postinst/postrm scripts
+ # calling the old /usr/lib/R/share/perl path
+ #(cd $(debtmp)/usr/lib/R && ln -s ../../share/R/share . )
+ # edd 06 Feb 2006 softlink fails with upgrades from older versions
+ # edd 29 Jan 2009 Not needed as of R 2.9.0
+ # dh_installdirs -p$(corepackage) usr/lib/R/share/perl
+ # install -m 0644 debian/build-help.pl \
+ # debian/$(corepackage)/usr/lib/R/share/perl/
+
+ # add tab completion by Deepayan
+ #install -m 0644 debian/R.bash_completion \
+ # debian/$(corepackage)/etc/bash_completion.d/R
+ # edd 24 Mar 2014 now installs via dh_bash-completion
+ dh_bash-completion
+ # edd 12 Jan 2016 new location
+ #install -m 0644 debian/R.bash-completion \
+ # debian/$(corepackage)/usr/share/bash-completion/completions/R
+
+ # edd 02 May 2007 add libR.conf for ld.so
+ # edd 13 Sep 2009 no more under Policy 3.8.3
+# install -m 0644 debian/libR.conf \
+# debian/$(corepackage)/etc/ld.so.conf.d/libR.conf
+ # edd 03 Apr 2010 add a link from usr/lib
+ (cd $(debtmp)/usr/lib/; \
+ ln -sv R/lib/libR.so . )
+
+ # edd 21 Jun 2012 add icon and desktop file from Philip Johnson's patch
+ (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
+ install -m 0644 debian/icon-class-patch/rlogo_icon.png \
+ debian/$(corepackage)/usr/share/icons/hicolor/48x48/apps
+ install -m 0644 debian/icon-class-patch/R.desktop \
+ debian/$(corepackage)/usr/share/applications
+ rm debian/icon-class-patch/rlogo_icon.png
+
+ touch install-arch-stamp
+
+#install-indep: make-arch make-indep install-arch install-indep-stamp
+install-indep: make-indep install-indep-stamp
+install-indep-stamp:
+ @echo "*** install-indep ***"
+ dh_testdir
+ dh_testroot
+ dh_prep -a
+ dh_installdirs -A
+
+# make prefix=$(debtmp)/usr install-pdf
+#
+# # the indep package r-doc-info is made now
+# make prefix=$(debtmp)/usr \
+# infodir=$(debtmp)/usr/share/info install-info
+#
+# # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
+# dh_movefiles -p$(pdfpackage)
+# # move the html manual files in r-doc-html.files into r-doc-html
+# dh_movefiles -p$(htmlpackage)
+# touch install-indep-stamp
+# # move files for r-doc-info
+# dh_movefiles -p$(infopackage)
+
+ # but clean up dir and old.dir
+ rm -vf $(debbase)/$(infopackage)/usr/share/info/dir \
+ $(debbase)/$(infopackage)/usr/share/info/dir.old
+
+ touch install-indep-stamp
+
+
+# Build architecture-independent files here.
+# edd 5 Feb 2004 binary-indep: build-indep install-indep
+binary-indep: build-indep install-indep
+ @echo "*** binary-indep ***"
+ dh_testdir -i
+ dh_testroot -i
+ dh_link -i
+ #dh_installdebconf -i
+ dh_installdocs -i
+ dh_installdocs -v -p$(htmlpackage)
+ #dh_installexamples -i
+ #dh_installmenu -i
+ #dh_installemacsen -i
+ #dh_installpam -i
+ #dh_installmime -i
+ #dh_installinit -i
+ #dh_installcron -i
+ #dh_installmanpages -i
+ #dh_installinfo -i
+ #dh_undocumented -i
+ dh_installchangelogs -i
+ # install lintian "silencer"
+ # edd 13 Oct 2009 this package is no longer needed / created
+# install -p -m 0644 debian/$(latexpackage).lintian $(debbase)/$(latexpackage)/usr/share/lintian/overrides/$(latexpackage)
+
+ dh_installdirs -p$(devpackage) usr/share/R/debian
+ install -p -m 0755 debian/r-cran.mk \
+ $(debbase)/$(devpackage)/usr/share/R/debian
+
+ dh_compress -i
+ dh_fixperms -i
+ #dh_suidregister -i
+ dh_installdeb -i
+ #dh_perl -i
+ dh_gencontrol -i
+ dh_md5sums -i
+ dh_builddeb -i
+
+# Build architecture-dependent files here.
+binary-arch: build-arch install-arch
+ @echo "*** binary-arch ***"
+ dh_testdir -a
+ dh_testroot -a
+ #dh_installdebconf -a
+ # edd 04 Apr 2006 AUTHORS RESOURCES THANKS Y2K FAQ all gone
+ dh_installdocs -p$(corepackage) doc/NEWS.* README \
+ debian/README.Atlas \
+ debian/README.mathlib
+ dh_installdocs -p$(nmathpackage) doc/NEWS.* README \
+ debian/README.mathlib
+ dh_installdocs -p$(dbugpackage)
+ #dh_installexamples -a
+ #dh_installexamples -p$(corepackage) src/nmath/standalone/test.c
+ dh_installexamples -p$(nmathpackage) src/nmath/standalone/test.c
+ #dh_installmenu -a
+ #dh_installemacsen -a
+ #dh_installpam -a
+ #dh_installmime -a
+ #dh_installinit -a
+ #dh_installcron -a
+ #dh_installmanpages -a -p$(corepackage) getline.3
+ #dh_installman -p$(corepackage) doc/R.1
+ ## dh_installinfo -a -n doc/manual/R-*.info*
+ ## edd 04 Apr 2004 manual is dangling unless r-doc-pdf is installed ...
+ ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/html .)
+ ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/manual .)
+ # ... so install doc as a link, as we already did with library
+ # (cd $(debdoc) && ln -s ../../../lib/R/doc .)
+ (cd $(debdoc) && ln -s ../../R/doc .)
+ (cd $(debdoc) && ln -s ../../../lib/R/library .)
+ # install lintian "silencer"
+ install -p -m 0644 debian/$(corepackage).lintian \
+ $(debbase)/$(corepackage)/usr/share/lintian/overrides/$(corepackage)
+ install -p -m 0644 debian/$(recdpackage).lintian \
+ $(debbase)/$(recdpackage)/usr/share/lintian/overrides/$(recdpackage)
+ install -p -m 0644 debian/$(nmathpackage).lintian \
+ $(debbase)/$(nmathpackage)/usr/share/lintian/overrides/$(nmathpackage)
+# install -p -m 0644 debian/$(dbugpackage).lintian \
+# $(debbase)/$(dbugpackage)/usr/share/lintian/overrides/$(dbugpackage)
+ #dh_undocumented -a
+ dh_installchangelogs -a -k doc/NEWS
+# dh_strip -a
+ dh_strip --sourcedir=$(debtmp) --dbg-package=r-base-core-dbg
+ dh_strip --sourcedir=$(debmat)
+ dh_compress -a
+ dh_fixperms -a
+ #dh_suidregister -a
+ dh_link -a
+ dh_makeshlibs -a
+ dh_installdeb -a
+ dh_perl -a
+ dh_shlibdeps -a -l $(debbase)/$(corepackage)/usr/lib/R/lib
+# @echo "*** Pruning shlibdeps result from double atlas entry ***"
+# cat debian/r-base-core.substvars
+# perl -p -i -e 's/atlas2-base, //' debian/r-base-core.substvars
+# cat debian/r-base-core.substvars
+# @echo "*** Pruning atlas from r-recommended shlibdeps ***"
+# cat debian/r-recommended.substvars
+# perl -p -i -e 's/atlas2-base, //' debian/r-recommended.substvars
+# cat debian/r-recommended.substvars
+# echo "*** Done ***"
+ dh_gencontrol -a
+ dh_md5sums -a
+ dh_builddeb -a
+
+#binary: binary-indep binary-arch install-arch install-indep
+binary: make-stamp check binary-arch binary-indep
+
+.PHONY: build clean binary-indep binary-arch binary install install-arch install-indep
diff --git a/debian/rules,v b/debian/rules,v
new file mode 100644
index 0000000..6006c5f
--- /dev/null
+++ b/debian/rules,v
@@ -0,0 +1,758 @@
+head 1.3;
+access;
+symbols;
+locks
+ edd:1.3; strict;
+comment @# @;
+
+
+1.3
+date 2007.05.06.17.13.23; author edd; state Exp;
+branches;
+next 1.2;
+
+1.2
+date 2007.05.06.17.06.12; author edd; state Exp;
+branches;
+next 1.1;
+
+1.1
+date 2007.05.06.17.03.31; author edd; state Exp;
+branches;
+next ;
+
+
+desc
+@@
+
+
+1.3
+log
+@lots of cleanup
+@
+text
+@#!/usr/bin/make -f
+# debian/rules file for the Debian GNU/Linux r-base package
+# Copyright 1997-2007 by Douglas Bates <bates@@stat.wisc.edu>
+# and Dirk Eddelbuettel <edd@@debian.org>
+#
+# $Id: rules,v 1.2 2007/05/06 17:06:12 edd Exp edd $
+
+corepackage = r-base-core
+devpackage = r-base-dev
+latexpackage = r-base-latex
+pdfpackage = r-doc-pdf
+htmlpackage = r-doc-html
+nmathpackage = r-mathlib
+infopackage = r-doc-info
+recdpackage = r-recommended
+
+# for the standalone library, no sonames are assigned in the upstream Makefiles
+somaj = 1
+somin = 0
+sorel = 0
+libver = $(somaj).$(somin).$(sorel)
+
+debbase := $(CURDIR)/debian
+debtmp := $(debbase)/$(corepackage)
+debdoc := $(debbase)/$(corepackage)/usr/share/doc/$(corepackage)
+debmat := $(debbase)/$(nmathpackage)
+debetc := $(debbase)/$(corepackage)/usr/lib/R/etc
+debinf := $(debbase)/$(infopackage)
+
+## edd 24 Oct 2005 use DEB_BUILD_GNU_CPU, not DEB_BUILD_GNU_TYPE
+## updated rules throughout
+arch := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
+buildarch := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+#export DH_VERBOSE = 1
+
+# edd 15 Aug 2001 default to blas, atlas can override it
+#atlas = --with-blas=blas
+# dmb 04 Apr 2003 better to use no specify blas
+# atlas = --with-blas
+# edd 28 Apr 2003 try configuring with atlas
+# atlas = --with-blas=atlas
+# edd 16 Oct 2003 back to older default
+#atlas = --with-blas=blas
+# edd 26 Feb 2004 point to refblas3
+atlas = --with-blas=-lblas-3
+
+# edd 08 Mar 2003 use the new lapack feature
+# edd 27 Apr 2003 Set this to =no as we currently see numerical errors
+#lapack = --with-lapack=no
+# edd 26 Feb 2004 point to lapack3
+#lapack = --with-lapack=-llapack-3
+# edd 13 Oct 2004 Set this once again to =no as we still see numerical errors
+lapack = --with-lapack=no
+
+# edd 02 Sep 2001 default to g77 but let m68k use f2c
+# edd 06 Mar 2003 enforce 3.2 versions explicitly
+# so that on testing we will pick them over 2.95
+# edd 07 Jun 2003 let's fall back to the default compilers
+# edd 08 Sep 2005 real defaults, i.e. remove -3.4 strings
+# edd 03 Apr 2006 switch to gfortran
+# edd 04 Apr 2006 use optimflags, build per-compiler flags later
+fortrancompiler = F77=gfortran
+compiler = gcc
+cxxcompiler = g++
+optimflags = -O3 -pipe
+
+# edd 04 Sep 2001 default compiler flags, lowered for m68k
+#compilerflags = -O2
+# m68k barks when using g77, and when gcc use -O2
+# edd 26 Nov 2002 switched back to g77
+# edd 02 Jun 2003 switched back
+# cts 04 Jun 2003 use -O1 on m68k
+#ifeq ($(arch),m68k)
+#fortrancompiler = F2C=f2c
+#compilerflags = -O1
+#endif
+
+# edd 14 Nov 2003 turn blas off on arm
+ifeq ($(arch),arm)
+atlas = --without-blas
+endif
+
+## edd 09 Nov 2001 ia64 needs gcc-3.0, hppa gets it by default
+#ifeq ($(arch),ia64)
+#fortrancompiler = F77=g77-3.0
+#compiler = gcc-3.0
+#cxxcompiler = g++-3.0
+#compilerflags = -O2
+#endif
+
+## lamont@@debian.org 06 Dec 2001 hppa needs -ffunction-sections
+ifeq ($(arch),hppa)
+optimflags = -O2 -ffunction-sections
+endif
+
+## edd 20 Jun 2002 no optimisation or debugging on baby systems
+## edd 02 Jun 2003 use this on arm only
+#ifneq "$(findstring $(arch), m68k arm)" ""
+ifneq "$(findstring $(arch), arm)" ""
+optimflags = -O0 -g0
+endif
+
+## edd 09 Apr 2006 per patch from Andreas Jochens in #361604
+ifeq ($(arch),powerpc64)
+optimflags += -mminimal-toc
+endif
+
+## edd 04 Apr 2006 generalize from old compilerflags to per-compiler
+cflags = -std=gnu99 $(optimflags)
+cxxflags = $(optimflags)
+fcflags = $(optimflags)
+
+## edd 17 Sep 2006 suggested by Brian Ripley in email dated 15 Sep 2006
+#ldflags = -Wl,-O1,-Bdirect,--hash-style=both
+# old call: ldflags = -Wl,-O1
+## edd 06 May 2007 try it
+ldflags = -Wl,-O1,-Bdirect,--hash-style=both
+
+maketest:
+ @@echo "Hi $(arch)"
+ @@echo "$(findstring $(arch), i486 hppa arm)"
+ifeq "$(findstring $(arch), hppa arm)" ""
+ @@echo "**** TRUE if the arch is NOT in the list as !find == '' ***"
+endif
+ifneq "$(findstring $(arch), i486 hppa arm)" ""
+ @@echo "**** TRUE if the arch is in list as find != '' is TRUE ***"
+endif
+ @@echo Bye
+
+get-orig-source: upstream
+upstream:
+ #links http://cran.us.r-project.org/src/base
+ links http://cran.r-project.org/src/base/?M=D
+
+upstreamdevel:
+ links ftp://ftp.stat.math.ethz.ch/Software/R
+ #links http://cran.us.r-project.org/src/base
+ #rsync -vaC rsync.r-project.org::r-devel .
+
+prerelease:
+ links http://cran.r-project.org/src/base-prerelease
+
+
+## edd 24 Oct 2003 build is invoked by the buildd, so we would prefer to
+## not imply build-indep; unfortunately R does not build
+## properly without it, so we have to stick with it
+## edd 15 Jan 2004 trying again on build only build: build-arch build-indep
+## the main hook is to then have binary depend on both
+## binary-arch and binary-indep, and those on their builds
+build: build-arch
+
+build-arch: make-arch
+
+build-indep: make-indep
+
+configure: configure-stamp
+configure-stamp:
+ @@echo "*** configure ***"
+
+ # we have to disable use of the expanded R_LD_LIBRARY_PATH as it
+ # conflicts with Debian's Atlas-can-replace-Blas scheme
+ # so set R_LD_LIBRARY_PATH to the minimal value R_HOME/bin
+ # and discard what configure finds for it on this machine
+ ## edd 06 May 2007 no longer used in R.sh.in
+ #perl -p -i -e 's|:\@@R_LD_LIBRARY_PATH\@@||' src/scripts/R.sh.in
+
+ dh_testdir
+ R_PAPERSIZE=letter \
+ R_BROWSER=sensible-browser \
+ PAGER=/usr/bin/pager \
+ PERL=/usr/bin/perl \
+ R_UNZIPCMD=/usr/bin/unzip \
+ R_ZIPCMD=/usr/bin/zip \
+ R_PRINTCMD=/usr/bin/lpr \
+ LIBnn=lib \
+ AWK=/usr/bin/awk \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ CPPFLAGS= \
+ LDFLAGS= \
+ FLIBS= \
+ rsharedir=/usr/share/R/share \
+ rincludedir=/usr/share/R/include \
+ rdocdir=/usr/share/R/doc \
+ ./configure --prefix=/usr \
+ --with-system-bzlib \
+ --with-jpeg \
+ --with-system-pcre \
+ --with-png \
+ --with-readline \
+ --with-tcltk \
+ --with-system-zlib \
+ --mandir=/usr/share/man \
+ --infodir=/usr/share/info \
+ --datadir=/usr/share/R/share \
+ --includedir=/usr/share/R/include \
+ $(atlas) \
+ $(lapack) \
+ --without-gnome \
+ --enable-R-profiling \
+ --enable-R-shlib \
+ --enable-memory-profiling \
+ --without-recommended-packages \
+ --build $(buildarch)
+
+ touch configure-stamp
+
+make-arch: configure make-arch-stamp
+make-arch-stamp:
+ @@echo "*** make-arch ***"
+ $(MAKE) CFLAGS="$(cflags)" \
+ CXXFLAGS="$(cxxflags)" \
+ FFLAGS="$(fcflags)" \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ LDFLAGS="$(ldflags)" \
+ R
+
+ # the top-level 'make stamp-recommended' target implies 'make docs'
+ # which (for the buildds) implies a lot of time wasted generating
+ # output we already take from the initial i386 build
+# $(MAKE) CFLAGS="$(compilerflags)" \
+# CXXFLAGS="$(compilerflags)" \
+# FFLAGS="$(compilerflags)" \
+# CC=${compiler} \
+# CXX=${cxxcompiler} \
+# ${fortrancompiler} \
+# stamp-recommended
+
+ # make standalone math lib
+ (cd src/nmath/standalone; \
+ $(MAKE) CFLAGS="$(cflags) -D_REENTRANT" \
+ CXXFLAGS="$(cxxflags) -D_REENTRANT" \
+ FFLAGS="$(fcflags) -D_REENTRANT" \
+ CC=${compiler} \
+ CXX=${cxxcompiler} \
+ ${fortrancompiler} \
+ all )
+
+ # edd 25 Jan 2004 make install needs html docs
+ # edd 03 Feb 2004 new test, try without
+ #make docs
+ # edd 15 Jan 2004 make install needs html docs
+ # edd 25 Jan 2004 not needed as we have 'make docs'
+ ## make html
+ $(MAKE) docs R_CMD_BUILD_HELP_OPTS="--txt --example"
+
+ touch make-arch-stamp
+
+make-indep: configure make-indep-stamp
+make-indep-stamp:
+ @@echo "*** make-indep ***"
+ ## edd 12 Jan 2004 uncommenting 'make docs' to split binary all/any
+ ## now that recommended packages aren't made
+ ## edd 25 Jan 2004 make docs and make html are made in make-arch
+ ## edd 05 Feb 2004 finally, this works in pre-1.9.0 with Kurt's
+ ## R_CMD_BUILD_HELP_OPTS
+ $(MAKE) docs
+ $(MAKE) html
+ $(MAKE) help
+ $(MAKE) info
+ $(MAKE) pdf
+ touch make-indep-stamp
+
+make: make-stamp
+make-stamp: make-arch make-indep
+
+check: make-arch check-stamp
+check-stamp:
+ @@echo "*** check ***"
+#ifneq ($(arch),arm)
+## edd 11 Oct 2005 also disable on hppa
+ifeq "$(findstring $(arch), hppa arm)" ""
+ -make check
+endif
+ touch check-stamp
+
+clean:
+ @@echo "*** clean ***"
+ dh_testdir
+ dh_testroot
+ rm -f configure-stamp \
+ build-stamp build-indep-stamp build-arch-stamp \
+ make-stamp make-arch-stamp make-indep-stamp \
+ install-indep-stamp install-arch-stamp \
+ check-stamp
+ -$(MAKE) distclean
+ -rm -f `find . -name "*~"`
+ -rm -rf debian/tmp debian/files* core debian/substvars
+ -rm -f doc/html/function.html doc/html/packages.html
+ -rm -f modules/*.so src/unix/Rscript
+ # left over in CVS from r-base --> r-base-core transition
+ #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
+ # r-base.menu r-base.postinst)
+ dh_clean
+
+install: install-arch install-indep
+
+install-arch: make-arch check install-arch-stamp
+install-arch-stamp:
+ @@echo "*** install-arch ***"
+ dh_testdir
+ dh_testroot
+ dh_clean -a -k
+ dh_installdirs -A
+ @@echo $(debtmp)
+
+ $(MAKE) DESTDIR=$(debtmp) install
+
+ (cd src/nmath/standalone; \
+ $(MAKE) DESTDIR=$(debtmp) install )
+
+ # fix permissions (Lintian)
+ # edd 15 Jan 2006 now under /usr/share/R
+ # edd 06 May 2007 seems this is no longer needed either
+# chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh \
+# $(debtmp)/usr/share/R/share/sh/help-links.sh \
+# $(debtmp)/usr/share/R/share/sh/help-print.sh
+
+ # remove unneeded license file, but link them back
+ rm -v $(debtmp)/usr/lib/R/COPYING
+ (cd $(debtmp)/usr/lib/R/; \
+ ln -s ../../share/common-licenses/GPL COPYING)
+ rm -v $(debtmp)/usr/share/R/doc/COPYING \
+ $(debtmp)/usr/share/R/doc/COPYING.LIB
+ (cd $(debtmp)/usr/share/R/doc; \
+ ln -s ../../../share/common-licenses/GPL COPYING; \
+ ln -s ../../../share/common-licenses/LGPL COPYING.LIB )
+
+ # edd 15 Jul 2002 reduce compile load on small machines
+#ifneq "$(findstring $(arch), m68k arm)" ""
+# perl -p -i -e 's/-g -O2/-g0 -O0/g' $(debtmp)/usr/lib/R/etc/Makeconf
+#endif
+
+ # edd 10 Jan 2003 fix Perl interpreter path
+ # edd 05 May 2005 no longer needed
+# (cd $(debtmp)/usr/lib/R/bin; \
+# for file in Rdconv Rprof Sd2Rd build check; do \
+# perl -p -i -e "s|/usr/local/bin/perl|/usr/bin/perl|" \
+# $${file}; \
+# done)
+
+ # edd 25 Sep 2005 link TeX files into texmf
+ # edd 03 Oct 2006 use link into /usr/share/, not /usr/lib/
+ (cd $(debtmp)/usr/share/texmf/tex/latex && \
+ ln -s ../../../R/share/texmf R)
+
+ # that being done, now install in different sub-packages
+
+ # move files for r-recommended
+
+ # move the html manual files in r-doc-html.files into r-doc-html
+ # these get built in make-arch too ...
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
+
+ # move files for r-base-html
+ dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-html
+ # move files for r-base-latex
+ dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-latex
+
+ make prefix=$(debtmp)/usr \
+ rdocdir=$(debtmp)/usr/share/R/doc \
+ install-pdf
+
+ # the indep package r-doc-info is made now
+ make prefix=$(debtmp)/usr \
+ infodir=$(debtmp)/usr/share/info install-info
+
+ # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(pdfpackage)
+
+ # move the html manual files in r-doc-html.files into r-doc-html
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
+
+ touch install-indep-stamp
+ # edd 06 Dec 2006 lintian wants them compressed with -9, and R
+ # seems to pre-zip them lower
+ gunzip -9v $(debtmp)/usr/share/info/*.gz
+ # move files for r-doc-info
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(infopackage)
+ # deal with stupid automake / install-info issue (cf #235713)
+ rm -vf $(debinf)/usr/share/info/dir \
+ $(debinf)/usr/share/info/dir.old
+
+ # move all the rest into r-base-core
+ # edd 10 Sep 2005 no longer needed as we install into r-base-core
+ # dh_movefiles -p$(corepackage)
+
+ # for the standalone library package, move the two libs
+ # as 'make install' ignores these, we have to do it by hand
+ dh_installdirs -p$(nmathpackage) usr/include usr/lib \
+ usr/share/lintian/overrides \
+ usr/lib/pkgconfig
+ # move the libraries made and installed by R, and the pkgconfig file
+ dh_movefiles --sourcedir=debian/$(corepackage) -p$(nmathpackage)
+ # move the library to a lib*.so.major.0.0, then link
+ (cd $(debmat)/usr/lib; \
+ mv -v libRmath.so libRmath.so.$(libver); \
+ ln -sv libRmath.so.$(libver) libRmath.so.$(somaj); \
+ ln -sv libRmath.so.$(somaj) libRmath.so)
+ # and create a link for Rmath.h
+ # rather copy directly into the more independent package r-mathlib
+ install -m 0644 src/include/Rmath.h \
+ $(debmat)/usr/include
+
+ # now deal with $R_HOME/etc <--> /etc/R
+ # edd 03 Apr 2003 patch Renviron for new R_LIBS standard
+ # edd 24 Apr 2004 patch Renviron for R_PAPERSIZE (bug #245525)
+ # edd 16 Jun 2004 nope, doesn't work
+ # edd 09 Apr 2005 also move the new file repositories to /etc/R
+ # edd 24 Sep 2006 idem for ldpaths
+ (cd $(debetc); \
+ cat $(debbase)/Renviron-R_LIBS.patch | patch --verbose; \
+ mv Makeconf Renviron repositories ldpaths \
+ ../../../../etc/R/; \
+ ln -s /etc/R/Makeconf .; \
+ ln -s /etc/R/Renviron .; \
+ ln -s /etc/R/ldpaths .; \
+ ln -s /etc/R/repositories . )
+# cat $(debbase)/Renviron-R_PAPERSIZE.patch | patch --verbose;
+
+ # deal with build.help.pl's --htmllists argument
+ (cd $(debtmp)/usr/share/R/share/perl; \
+ cat $(debbase)/build-help.pl.patch | patch --verbose )
+
+ # edd 28 Sep 2006 patch javareconf to modify in /etc/R
+ (cd $(debtmp)/usr/lib/R/bin; \
+ cat $(debbase)/javareconf.patch | patch --verbose )
+
+ # edd 24 Jan 2006 deal with old postinst/postrm scripts
+ # calling the old /usr/lib/R/share/perl path
+ #(cd $(debtmp)/usr/lib/R && ln -s ../../share/R/share . )
+ # edd 06 Feb 2006 softlink fails with upgrades from older versions
+ dh_installdirs -p$(corepackage) usr/lib/R/share/perl
+ install -m 0644 debian/build-help.pl \
+ debian/$(corepackage)/usr/lib/R/share/perl/
+
+ # add tab completion by Deepayan
+ install -m 0644 debian/R.bash_completion \
+ debian/$(corepackage)/etc/bash_completion.d/R
+
+ # edd 02 May 2007 add libR.conf for ld.so
+ install -m 0644 debian/libR.conf \
+ debian/$(corepackage)/etc/ld.so.conf.d/libR.conf
+
+ touch install-arch-stamp
+
+#install-indep: make-arch make-indep install-arch install-indep-stamp
+install-indep: make-indep install-indep-stamp
+install-indep-stamp:
+ @@echo "*** install-indep ***"
+ dh_testdir
+ dh_testroot
+ dh_clean -a -k
+ dh_installdirs -A
+
+# make prefix=$(debtmp)/usr install-pdf
+#
+# # the indep package r-doc-info is made now
+# make prefix=$(debtmp)/usr \
+# infodir=$(debtmp)/usr/share/info install-info
+#
+# # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
+# dh_movefiles -p$(pdfpackage)
+# # move the html manual files in r-doc-html.files into r-doc-html
+# dh_movefiles -p$(htmlpackage)
+# touch install-indep-stamp
+# # move files for r-doc-info
+# dh_movefiles -p$(infopackage)
+
+ # but clean up dir and old.dir
+ rm -vf $(debbase)/$(infopackage)/usr/share/info/dir \
+ $(debbase)/$(infopackage)/usr/share/info/dir.old
+
+ touch install-indep-stamp
+
+
+# Build architecture-independent files here.
+# edd 5 Feb 2004 binary-indep: build-indep install-indep
+binary-indep: build-indep install-indep
+ @@echo "*** binary-indep ***"
+ dh_testdir -i
+ dh_testroot -i
+ dh_link -i
+ #dh_installdebconf -i
+ dh_installdocs -i
+ #dh_installexamples -i
+ #dh_installmenu -i
+ #dh_installemacsen -i
+ #dh_installpam -i
+ #dh_installmime -i
+ #dh_installinit -i
+ #dh_installcron -i
+ #dh_installmanpages -i
+ #dh_installinfo -i
+ #dh_undocumented -i
+ dh_installchangelogs -i
+ # install lintian "silencer"
+ install -p -m 0644 debian/$(latexpackage).lintian \
+ $(debbase)/$(latexpackage)/usr/share/lintian/overrides/$(latexpackage)
+
+ dh_installdirs -p$(devpackage) usr/share/R/debian
+ install -p -m 0755 debian/r-cran.mk \
+ $(debbase)/$(devpackage)/usr/share/R/debian
+
+ dh_compress -i
+ dh_fixperms -i
+ #dh_suidregister -i
+ dh_installdeb -i
+ #dh_perl -i
+ dh_gencontrol -i
+ dh_md5sums -i -X'usr/bin/R'
+ dh_builddeb -i
+
+# Build architecture-dependent files here.
+binary-arch: build-arch check install-arch
+ @@echo "*** binary-arch ***"
+ dh_testdir -a
+ dh_testroot -a
+ #dh_installdebconf -a
+ #dh_link -a
+ # edd 04 Apr 2006 AUTHORS RESOURCES THANKS Y2K FAQ all gone
+ dh_installdocs -p$(corepackage) NEWS ONEWS OONEWS README \
+ debian/README.Atlas \
+ debian/README.mathlib
+ dh_installdocs -p$(nmathpackage) NEWS ONEWS OONEWS README \
+ debian/README.mathlib
+ #dh_installexamples -a
+ #dh_installexamples -p$(corepackage) src/nmath/standalone/test.c
+ dh_installexamples -p$(nmathpackage) src/nmath/standalone/test.c
+ dh_installmenu -a
+ #dh_installemacsen -a
+ #dh_installpam -a
+ #dh_installmime -a
+ #dh_installinit -a
+ #dh_installcron -a
+ #dh_installmanpages -a -p$(corepackage) getline.3
+ #dh_installman -p$(corepackage) doc/R.1
+ ## dh_installinfo -a -n doc/manual/R-*.info*
+ ## edd 04 Apr 2004 manual is dangling unless r-doc-pdf is installed ...
+ ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/html .)
+ ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/manual .)
+ # ... so install doc as a link, as we already did with library
+ # (cd $(debdoc) && ln -s ../../../lib/R/doc .)
+ (cd $(debdoc) && ln -s ../../R/doc .)
+ (cd $(debdoc) && ln -s ../../../lib/R/library .)
+ # install lintian "silencer"
+ install -p -m 0644 debian/$(corepackage).lintian \
+ $(debbase)/$(corepackage)/usr/share/lintian/overrides/$(corepackage)
+# install -p -m 0644 debian/$(recdpackage).lintian \
+# $(debbase)/$(recdpackage)/usr/share/lintian/overrides/$(recdpackage)
+ install -p -m 0644 debian/$(nmathpackage).lintian \
+ $(debbase)/$(nmathpackage)/usr/share/lintian/overrides/$(nmathpackage)
+ #dh_undocumented -a
+ dh_installchangelogs -a -k NEWS
+ dh_strip -a
+ dh_compress -a
+ dh_fixperms -a
+ #dh_suidregister -a
+ dh_makeshlibs -a
+ dh_installdeb -a
+ dh_perl -a
+ dh_shlibdeps -a
+# @@echo "*** Pruning shlibdeps result from double atlas entry ***"
+# cat debian/r-base-core.substvars
+# perl -p -i -e 's/atlas2-base, //' debian/r-base-core.substvars
+# cat debian/r-base-core.substvars
+# @@echo "*** Pruning atlas from r-recommended shlibdeps ***"
+# cat debian/r-recommended.substvars
+# perl -p -i -e 's/atlas2-base, //' debian/r-recommended.substvars
+# cat debian/r-recommended.substvars
+# echo "*** Done ***"
+ dh_gencontrol -a
+ dh_md5sums -a -X'usr/bin/R' -X'usr/bin/Rscript' \
+ -XLibIndex -Xindex.txt \
+ -Xfunction.html -Xpackages.html
+ dh_builddeb -a
+
+#binary: binary-indep binary-arch install-arch install-indep
+binary: make-stamp check binary-arch binary-indep
+
+.PHONY: build clean binary-indep binary-arch binary install install-arch install-indep
+@
+
+
+1.2
+log
+@removed gnome package entries
+@
+text
+@d6 1
+a6 1
+# $Id: rules,v 1.1 2007/05/06 17:03:31 edd Exp edd $
+a34 2
+
+
+a35 1
+#export DH_COMPAT = 4
+d116 3
+a118 1
+ldflags = -Wl,-O1
+d165 2
+a166 1
+ perl -p -i -e 's|:\@@R_LD_LIBRARY_PATH\@@||' src/scripts/R.sh.in
+a242 3
+# libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.$(somaj) \
+# )
+
+d296 2
+a297 2
+ #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
+ # r-base.menu r-base.postinst)
+a315 27
+# $(MAKE) prefix=$(debtmp)/usr \
+# mandir=$(debtmp)/usr/share/man \
+# rsharedir=$(debtmp)/usr/share/R/share \
+# rincludedir=$(debtmp)/usr/share/R/include \
+# rdocdir=$(debtmp)/usr/share/R/doc \
+# install
+
+ # link $R_HOME/bin/R to real one, and set R_HOME_DIR env.var.
+ # edd 05 Sep 2005 expand this to R_SHARE_DIR, R_INCLUDE_DIR, R_DOC_DIR
+ # edd 15 Jan 2006 now let those three point to /usr/share/R
+ # edd 05 May 2007 no longer needed as DESTDIR now supported
+# (cd $(debtmp)/usr/lib/R/bin/; \
+# ln -svf ../../../bin/R R; \
+# cd ../../../bin; \
+# perl -p -i -e \
+# 's|^R_HOME_DIR=.*|R_HOME_DIR=/usr/lib/R|;\
+# s|^R_SHARE_DIR=.*|R_SHARE_DIR=/usr/share/R/share|;\
+# s|^R_INCLUDE_DIR=.*|R_INCLUDE_DIR=/usr/share/R/include|;\
+# s|^R_DOC_DIR=.*|R_DOC_DIR=/usr/share/R/doc|' R)
+
+ # set browser to mozilla as mozilla-1.0.0 works with help.start()
+ # (we're now using /usr/bin/sensible-browser, see above)
+# (cd $(debtmp)/usr/lib/R/etc; \
+# perl -p -i -e \
+# "s|R_BROWSER-'.*'|R_BROWSER-'/usr/bin/mozilla'|" \
+# Renviron)
+
+d318 4
+a321 3
+ chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh \
+ $(debtmp)/usr/share/R/share/sh/help-links.sh \
+ $(debtmp)/usr/share/R/share/sh/help-print.sh
+a350 5
+ # edd 02 May 2007 fix includedir in libR.pc
+ (cd $(debtmp)/usr/lib/pkgconfig; \
+ perl -p -i -e "s|/usr/lib/R/include|/usr/share/R/include|" \
+ libR.pc )
+
+a353 2
+ # doing this before html/latex moves ensure they keep their tex/latex
+# dh_movefiles -p$(recdpackage)
+a396 4
+# install -m 0644 src/nmath/standalone/libRmath.a \
+# $(debmat)/usr/lib
+# install -m 0644 src/nmath/standalone/libRmath.so \
+# $(debmat)/usr/lib/libRmath.so.$(libver)
+a403 2
+# install -m 0644 src/nmath/standalone/libRmath.pc \
+# $(debmat)/usr/lib/pkgconfig/libRmath.pc
+a404 2
+ #(cd $(debmat)/usr/include; \
+ # ln -s ../lib/R/include/Rmath.h .)
+d408 1
+@
+
+
+1.1
+log
+@Initial revision
+@
+text
+@d6 1
+a6 1
+# $Id$
+a12 1
+gnomepackage = r-gnome
+a34 8
+# set this to 1 (default) if you want the Gnome GUI package
+# edd 27 Feb 2005 as of R 2.1.0, the Gnome GUI is no longer included
+gnome = 0
+ifeq ($(gnome),0)
+gnomeconfig = --without-gnome
+else
+gnomeconfig = --with-gnome
+endif
+d201 1
+a201 1
+ $(gnomeconfig) \
+a386 5
+ # move the GNOME version to the r-gnome package
+#ifeq ($(gnome),1)
+# dh_movefiles -p$(gnomepackage) usr/lib/R/modules/R_gnome.so
+#endif
+
+a429 3
+#ifeq ($(gnome),1)
+# dh_installdirs -p$(gnomepackage) usr/share/lintian/overrides
+#endif
+a520 4
+#ifeq ($(gnome),1)
+# dh_installdirs $(gnomepackage)
+# dh_installchangelogs -p$(gnomepackage)
+#endif
+d530 1
+a530 1
+ dh_link -i -N$(gnomepackage)
+a567 3
+#ifeq ($(gnome),1)
+# dh_link -p$(gnomepackage)
+#endif
+d583 1
+a583 1
+ #dh_installmanpages -a -N$(gnomepackage) -p$(corepackage) getline.3
+a599 4
+#ifeq ($(gnome),1)
+# install -p -m 0644 debian/$(gnomepackage).lintian \
+# $(debbase)/$(gnomepackage)/usr/share/lintian/overrides/$(gnomepackage)
+#endif
+@
diff --git a/debian/shlibs.local b/debian/shlibs.local
new file mode 100644
index 0000000..e561429
--- /dev/null
+++ b/debian/shlibs.local
@@ -0,0 +1,2 @@
+libtk8.4 0 tk8.4 (>= 8.4.16-2)
+libtcl8.4 0 tcl8.4 (>= 8.4.16-2)
diff --git a/debian/shlibs.local.hidden b/debian/shlibs.local.hidden
new file mode 100644
index 0000000..e489893
--- /dev/null
+++ b/debian/shlibs.local.hidden
@@ -0,0 +1 @@
+libatlas 2 atlas2-base | atlas2
diff --git a/debian/simulate-buildd b/debian/simulate-buildd
new file mode 100644
index 0000000..1d60b84
--- /dev/null
+++ b/debian/simulate-buildd
@@ -0,0 +1,10 @@
+#!/bin/sh
+
+if [ ! -d debian ]
+then
+ echo "Needs to run from a build directory."
+fi
+fakeroot debian/rules clean
+debian/rules build
+fakeroot debian/rules binary-arch
+fakeroot debian/rules clean
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..d3827e7
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+1.0
diff --git a/debian/unused/Renviron-R_PAPERSIZE.patch b/debian/unused/Renviron-R_PAPERSIZE.patch
new file mode 100644
index 0000000..42969aa
--- /dev/null
+++ b/debian/unused/Renviron-R_PAPERSIZE.patch
@@ -0,0 +1,12 @@
+--- Renviron.orig 2005-09-08 23:00:58.000000000 -0500
++++ Renviron 2006-01-07 11:31:07.000000000 -0600
+@@ -6,7 +6,8 @@
+
+ R_PLATFORM=${R_PLATFORM-'i486-pc-linux-gnu'}
+ ## Default printer paper size
+-R_PAPERSIZE=${R_PAPERSIZE-'letter'}
++## edd 07 Jan 2006 try determining this at start-time based on paperconf
++R_PAPERSIZE=${R_PAPERSIZE-`paperconf`}
+ ## Default print command
+ R_PRINTCMD=${R_PRINTCMD-'/usr/bin/lpr'}
+ ## Default TeXMF stuff
diff --git a/debian/unused/control.r-gnome b/debian/unused/control.r-gnome
new file mode 100644
index 0000000..2f94c02
--- /dev/null
+++ b/debian/unused/control.r-gnome
@@ -0,0 +1,27 @@
+
+Package: r-gnome
+Section: gnome
+Architecture: all
+Depends: r-base-core
+Recommends: r-cran-gtkdevice
+Description: GNU R Gnome gui for statistical computing system
+ R is `GNU S' - A language and environment for statistical computing
+ and graphics. R is similar to the award-winning S system, which was
+ developed at Bell Laboratories by John Chambers et al. It provides a
+ wide variety of statistical and graphical techniques (linear and
+ nonlinear modelling, statistical tests, time series analysis,
+ classification, clustering, ...).
+ .
+ R is designed as a true computer language with control-flow
+ constructions for iteration and alternation, and it allows users to
+ add additional functionality by defining new functions. For
+ computationally intensive tasks, C, C++ and Fortran code can be
+ linked and called at run time.
+ .
+ This package used to provide the dynamic link libraries needed to start
+ GNU R with the GNOME libraries frontend as in "R --gui=GNOME".
+ .
+ As of R 2.1.0, this interface is no longer provided with the upstream
+ sources. As such, this package is now an empty stub that will be removed
+ in a subsequent revision of the Debian package.
+
diff --git a/debian/unused/makeLazyLoad.R.patch b/debian/unused/makeLazyLoad.R.patch
new file mode 100644
index 0000000..fe3ed1c
--- /dev/null
+++ b/debian/unused/makeLazyLoad.R.patch
@@ -0,0 +1,79 @@
+Message-ID: <16731.1755.857376.453277@mithrandir.hornik.net>
+Date: Wed, 29 Sep 2004 21:02:51 +0200
+To: Dirk Eddelbuettel <edd@debian.org>
+Cc: Prof Brian Ripley <ripley@stats.ox.ac.uk>,
+ Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>,
+ Chris Lawrence <chris@lordsutch.com>, bates@stat.wisc.edu,
+ kurt.hornik@r-project.org, martin.maechler@r-project.org
+Subject: Re: Still fails under 2.0.0 beta 2004.09.28 (Re: Build failures with R 2.0.0 beta)
+Reply-To: Kurt.Hornik@wu-wien.ac.at
+From: Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
+
+>>>>> Dirk Eddelbuettel writes:
+
+> On Wed, Sep 29, 2004 at 01:32:28PM +0100, Prof Brian Ripley wrote:
+>> I am effectively offline until Friday, but could try to look then.
+
+> I would _greatly_ appreciate your help. I applied Kurt's patch, but
+> that didn't fix it. I may have picked the wrong branch.
+
+Interesting. I just tried the effect of applying
+
+--- makeLazyLoad.R (revision 31251)
++++ makeLazyLoad.R (working copy)
+@@ -60,9 +60,13 @@
+ stop(paste("There is no package called", sQuote(package)))
+ dataDir <- file.path(pkgpath, "data")
+ } else {
+- pkgpath <- sub("/data$", "", dataDir)
+- package <- basename(pkgpath)
+- # avoid builddir != srcdir problems -- assume package has been installed
++ pkgpath <- dirname(dataDir)
++ package <- Sys.getenv("R_PACKAGE_NAME")
++ if(!nchar(package)) {
++ package <- basename(pkgpath)
++ }
++ ## avoid builddir != srcdir problems -- assume package has been
++ ## installed
+ lib.loc <- c(dirname(pkgpath), .libPaths())
+ }
+ if(file_test("-d", dataDir)) {
+
+and that seems to do the job for me.
+
+Can you pls try again?
+
+Brian: I am not sure about the intentions of the subsequent
+
+ lib.loc <- c(dirname(pkgpath), .libPaths())
+
+Is dirname(pkgpath) supposed to be the path to the library installed
+into? The Unix INSTALL script makes this available in the environment
+variable R_PACKAGE_DIR, so we might want to use this as well ...
+
+Best
+-k
+
+> I'd be happy to for now apply a patch in Debian's package only, but I
+> would not be surprise if the bug hit in other places too. I really
+> think that should be fixed before 2.0.0.
+
+>> I don't understand why this has not been resolved in the alpha period,
+>> though.
+
+> Because of an unfortunate combination of factors:
+
+> i) 2.0.0 breaks old packages, so I have _not_ inserted 2.0.0 into Debian
+> unstable yet, so no autobuilder reports.
+
+> ii) When I reported the cluster build failure, Martin could not replicate it
+> as I hadn't realized yet that it was tied also using $Package-$Version/
+> directories.
+
+> Dirk
+
+> --
+> Those are my principles, and if you don't like them... well, I have others.
+> -- Groucho Marx
+
+
diff --git a/debian/unused/r-gnome.links b/debian/unused/r-gnome.links
new file mode 100644
index 0000000..646c5d5
--- /dev/null
+++ b/debian/unused/r-gnome.links
@@ -0,0 +1 @@
+usr/share/doc/r-base-core usr/share/doc/r-gnome
diff --git a/debian/unused/r-gnome.lintian b/debian/unused/r-gnome.lintian
new file mode 100644
index 0000000..6ef26a4
--- /dev/null
+++ b/debian/unused/r-gnome.lintian
@@ -0,0 +1 @@
+r-gnome: menu-command-not-in-package /usr/lib/menu/r-gnome:4 /usr/bin/R
diff --git a/debian/unused/r-gnome.menu b/debian/unused/r-gnome.menu
new file mode 100644
index 0000000..f139ee2
--- /dev/null
+++ b/debian/unused/r-gnome.menu
@@ -0,0 +1,4 @@
+?package(r-gnome):needs="x11" \
+ section="Apps/Math" \
+ title="GNU R (Gnome)" \
+ command="/usr/bin/R --gui=GNOME --no-save"
diff --git a/debian/unused/r-gnome.preinst b/debian/unused/r-gnome.preinst
new file mode 100644
index 0000000..06fc5f8
--- /dev/null
+++ b/debian/unused/r-gnome.preinst
@@ -0,0 +1,26 @@
+#! /bin/sh
+#
+# r-gnome.preinst
+#
+# Written and GPL'ed by Dirk Eddelbuettel <edd@debian.org>
+
+set -e
+
+case "$1" in
+ install|upgrade)
+ # we want symlinks to r-base so old directories cannot exist
+ test -d /usr/share/doc/r-gnome && rm -rf /usr/share/doc/r-gnome
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 0
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
diff --git a/debian/updated_x11_logo.patch b/debian/updated_x11_logo.patch
new file mode 100644
index 0000000..a4a7e9b
--- /dev/null
+++ b/debian/updated_x11_logo.patch
@@ -0,0 +1,7692 @@
+Index: devX11.c
+===================================================================
+--- devX11.c (revision 68909)
++++ devX11.c (working copy)
+@@ -1606,7 +1606,7 @@
+ XInternAtom(display, "_NET_WM_ICON", False),
+ XInternAtom(display, "CARDINAL", False), 32,
+ PropModeReplace,
+- (const unsigned char*) rlogo_icon, 2 + 48*48);
++ (const unsigned char*) rlogo_icon, 2 + 99*77);
+
+ /* set up protocols so that window manager sends */
+ /* me an event when user "destroys" window */
+Index: rlogo_icon.h
+===================================================================
+--- rlogo_icon.h (revision 68909)
++++ rlogo_icon.h (working copy)
+@@ -1,51 +1,7625 @@
+ unsigned long rlogo_icon[] = {
+- 48,48,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1868983,0x27e837a,0x6959595,0x2a888b85,0x5881857f,0x7d7f827b,0x9b7e827a,0xb17c8078,0xc07c7f78,0xc97c8179,0xca797e76,0xc3777c73,0xb4777b74,0x9d747971,0x8074786f,0x5b757870,0x2e797d75,0x77e847e,0x164685f,0x16b7168,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x38a8d88,0x68b8f89,0x288b8e89,0x71868983,0xba848881,0xf6838780,0xff838780,0xff838780,0xff848881,0xff848881,0xff848881,0xff848881,0xff858982,0xff81857e,0xff80847d,0xff7f837b,0xff7c8079,0xff787e76,0xff747a71,0xff71766d,0xf86f736b,0xbf6d7269,0x766c7169,0x2c70726c,0x7656a62,0x3666b63,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x58a8e87,0x1a8d918b,0x608a8f88,0xc9888c86,0xff878c85,0xff898d87,0xff8b8f89,0xff8c9089,0xfe8d918b,0xfe8f938d,0xff90948e,0xff91958e,0xff91968f,0xff91968f,0xff939891,0xff8f948d,0xff8f938c,0xff8d918b,0xff8a8f88,0xff878c85,0xfe858983,0xfe82867f,0xff7d8179,0xff777c73,0xff70756c,0xff6a6f66,0xcf676c63,0x65666c63,0x1d656a61,0x55f655b,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x290978c,0x208e918b,0x728c9089,0xe48a8f88,0xff8c918a,0xff90948d,0xff91958e,0xfe929690,0xff91958e,0xff8d918a,0xff8d9189,0xff8e938c,0xff92968f,0xff959992,0xff959a93,0xff959a93,0xff959a93,0xff949992,0xff939891,0xff939891,0xff929790,0xff91968f,0xff90948e,0xff8e938c,0xff8a8f88,0xff858a83,0xfe81857e,0xff7b8078,0xff737870,0xff696e65,0xe963685f,0x7a61675e,0x245f645b,0x3626660,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x1091948f,0x5a8f928c,0xd68e918a,0xff90948d,0xff969a93,0xfe979a94,0xfe939790,0xff878c84,0xff7b7f77,0xff7a7f77,0xff858983,0xff92968f,0xff9b9f99,0xff9da19b,0xff999e97,0xff91958f,0xfe888c84,0xff7e827b,0xff767a73,0xff70756d,0xff6d726a,0xff6c7068,0xff6d7169,0xff6f746b,0xff72776f,0xff777c74,0xff7c8179,0xfe81867f,0xfe848881,0xfe82857f,0xfe7b8079,0xff72776f,0xff656a62,0xdd5e635a,0x605b6058,0x135b6057,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x2792968f,0x9790938d,0xff91948f,0xff9a9e97,0xfe9da19b,0xfe959992,0xff7e837b,0xff6f746c,0xff7c8078,0xff949791,0xffa8aca6,0xffb4b7b2,0xffafb2ad,0xfe999d97,0xff81857e,0xff6e726b,0xff5d6259,0xff53584f,0xfc4b4f47,0xf2464b43,0xea454941,0xe4454941,0xe1444941,0xe0474c44,0xe34b5048,0xe84f544c,0xf052574e,0xfa555a51,0xff5a6057,0xff62685e,0xff6e736b,0xff7a7e77,0xfe7d827a,0xfe797e75,0xff6d7169,0xff5d625a,0xa0575c53,0x2d54594f,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x3791958f,0xbf91958e,0xff969993,0xffa5a9a3,0xfea0a49e,0xff848881,0xff6a6f67,0xff7b8078,0xff9ea29b,0xffbabdb8,0xffc6c9c4,0xfeb5b8b3,0xfe949892,0xff737770,0xff535850,0xf93e423a,0xdc30342d,0xf150534e,0xde52544f,0xf8767874,0xdf7f817d,0xca888a86,0xbb8f918d,0xb4929591,0xb3949692,0xba929490,0xc68e918c,0xda8a8c88,0xec82847f,0xe871756e,0xeb686d65,0xeb5c6159,0xf2545950,0xff61665e,0xff72766e,0xff797e76,0xff71766e,0xff5e635b,0xc853584f,0x3f4e534b,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x37949892,0xcf92968f,0xff999d96,0xfeafb2ad,0xfe9a9e97,0xff72776f,0xff6d7169,0xff979b95,0xffbfc2be,0xffd1d3d0,0xfec0c2be,0xfe979c95,0xff6c7069,0xff434740,0xdf252922,0xe14a4d48,0xf180817d,0xc0999b96,0xe6d7d7d5,0xc3fbfbfa,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xf5ffffff,0xd5ffffff,0xdbe2e3e1,0xdebdbfbb,0xdf949892,0xe8787c76,0xe85b6057,0xfa5f645b,0xff72776f,0xfe737870,0xff60655c,0xd94f544b,0x3f4a4f47,0x0,0x0,0x0,
+- 0x0,0x0,0x21959993,0xcb949791,0xff9a9e97,0xfeb8bbb6,0xff939690,0xff666b63,0xff787d75,0xffaeb1ac,0xffd5d7d4,0xffd4d6d3,0xfeaeb1ac,0xff797d76,0xff42463f,0xf331352e,0xeb61635f,0xd0969895,0xc5cbced2,0xf4eef1f7,0xffeef1f7,0xfceaedf2,0xffe7eaef,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfbe5e7ed,0xfee6e9ee,0xfde9ecf1,0xf1f4f5f9,0xd4ffffff,0xd5f7f6f4,0xe8c4c5c1,0xe790938e,0xea62675f,0xfe696f66,0xff73776f,0xff5d625a,0xd4494e46,0x29494d45,0x0,0x0,
+- 0x0,0x4989e98,0xa7939791,0xff989c96,0xfebbbeb9,0xff979a94,0xff60655c,0xff7e827b,0xffbabdb9,0xffe0e2df,0xffd3d5d2,0xfea0a49e,0xff5f645d,0xf8272b24,0xdb3a3e38,0xe3a1a3a1,0xebf0f0f0,0xffffffff,0xd9bcc5d8,0xf4a0acc7,0xfaa0acc7,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc9,0xf99daac5,0xec94a0b9,0xe397a1b7,0xd8b3b8c7,0xcef1f2f7,0xe5fdfdfc,0xd1c4c7c3,0xd37d827a,0xfe6c7068,0xff72776f,0xff565b53,0xb442473f,0x85c5f57,0x0,
+- 0x0,0x52959993,0xff969a93,0xffaeb2ad,0xfeabaea9,0xff5e625a,0xff7b7f78,0xffbabdb8,0xffe7e8e6,0xffd6d7d4,0xfe9ea19c,0xff525750,0xec1a1e17,0xce555753,0xd7d6d6d5,0xf7ffffff,0xffffffff,0xffffffff,0xcf929eb8,0xf79babcd,0xff7a86a2,0xff6a748d,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a748d,0xff69758e,0xff6c7894,0xff7785a4,0xe96d7b9d,0xd76d7790,0xcfb6bac5,0xe5ffffff,0xebefefee,0xb2949791,0xf16d7269,0xff70756d,0xff474c44,0x6140443d,0x0,
+- 0x1b0a7b6,0xd2949891,0xff9ca09a,0xfec5c7c3,0xff656961,0xff6e736a,0xffaaada8,0xffe9eae8,0xffe0e2e0,0xfea9ada7,0xff565a52,0xeb181c16,0xbf565955,0xd7ededed,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b8,0xf6a7b6d9,0xff5b657b,0xff6d7a96,0xff707c9a,0xff707c9a,0xff6f7c99,0xff6c7997,0xff6c7997,0xff6d7a98,0xff6d7a98,0xff6d7a98,0xff6d7a97,0xff6d7a98,0xff6e7a98,0xff6e7b99,0xff6d7b98,0xfe6a7692,0xfe5f6a83,0xff606b83,0xff677490,0xee58637c,0xc9a5a9b4,0xf8fdfdfe,0xdffcfcfc,0xaea9ada7,0xf7767b72,0xff646961,0xde393d36,0x65e6358,
+- 0x39959992,0xff949892,0xffadb0ab,0xff9b9e99,0xff5a5e56,0xff90938d,0xffd8d9d7,0xffefefee,0xffc1c3bf,0xff6e726b,0xf821241e,0xd5525451,0xd9eeefee,0xfcffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff545d73,0xff7f91b6,0xff8495bc,0xff8395bc,0xff8496bc,0xffabbada,0xffaab9dc,0xffa5b5d9,0xffa5b5d9,0xffa5b5d9,0xffa7b6da,0xffa5b4d8,0xff9babcf,0xff90a1c5,0xff8798be,0xff7e8fb5,0xff7786aa,0xfe6f7d9c,0xfe636f89,0xff5b6781,0xea454e63,0xe4d1d3d7,0xffffffff,0xe9ffffff,0xb39fa29c,0xfd7a7f77,0xff42473f,0x473a3d35,
+- 0x8292968f,0xff969a94,0xfebdc0bc,0xff62675e,0xff70756d,0xffb0b3ad,0xfff1f1f0,0xffdfe1de,0xfe9ca09a,0xff393d36,0xea3b3d39,0xdecacac9,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8192b8,0xff8597be,0xff8496be,0xfea4b4d6,0xff8e9cb9,0xff5e6880,0xff5d6880,0xff5d6880,0xff5d6880,0xff5d677f,0xff5c677f,0xff68748e,0xfe7b89a7,0xff8291b2,0xff8495ba,0xff8799c1,0xff8496bd,0xff7887a9,0xfe677490,0xff424c62,0xd3797d88,0xf4f2f2f3,0xffffffff,0xeefcfcfc,0xce82867f,0xff5e635b,0x9430342e,
+- 0xb590948d,0xff969a93,0xffafb2ad,0xff53584f,0xff82867e,0xffcaccc8,0xfff4f5f4,0xffcbcdc9,0xff777b74,0xf320241d,0xe9787a76,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff95a4c4,0xfe474f64,0xf31b1e26,0xcb222632,0xcd222632,0xcd222632,0xcc212531,0xcd222633,0xe9343b4b,0xff515c74,0xfe6f7b99,0xfe7886a5,0xff8294b9,0xff8597bf,0xff8597bf,0xfe7a89a9,0xff545f78,0xd3303745,0xf4e2e3e4,0xffffffff,0xffffffff,0xd0cccdca,0xff7a7e77,0xc62d312a,
+- 0xcf8e928b,0xff949892,0xff9b9e98,0xff585d54,0xff8d928a,0xffd8d9d7,0xfff0f1f0,0xffbcbfba,0xff5b5f57,0xeb31342e,0xe0abacab,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8895b4,0xfc3f475b,0xc7383a40,0xfcf7f7f7,0xf9efefef,0xf9efefef,0xf9efefef,0xfdf0f0f1,0xd3e0e1e4,0xaf6d778c,0xff717e9d,0xfe7783a0,0xff7080a1,0xff8699c0,0xff8597bf,0xff8596b9,0xff616d88,0xf2282e3b,0xfbdbdbdc,0xffffffff,0xffffffff,0xc8fcfcfc,0xfa8b8f88,0xdf2f332d,
+- 0xce8a8e88,0xff91958f,0xff8b8f89,0xff5b5f57,0xff90958e,0xffdbdddb,0xffedeeed,0xffb5b8b3,0xff4f544c,0xf74b4e49,0xf3cccdcd,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfeffffff,0xe3cfd4dd,0xdc8091b3,0xff7a87a2,0xff6a7896,0xff8799c1,0xff8496be,0xff8e9ec2,0xfe67748f,0xff222734,0xffd7d7d9,0xfeffffff,0xffffffff,0xfdffffff,0xde949992,0xdf31352f,
+- 0xb4878b85,0xff8d918b,0xff8a8e87,0xff5b6057,0xff8d908a,0xffd5d7d5,0xffecedec,0xffb5b8b3,0xff535851,0xf74e524d,0xf2d0d1cf,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xe6d6dae4,0xd88f9fc4,0xff7e8aa4,0xff657290,0xff8799c1,0xff8396bd,0xff95a6c9,0xff646f89,0xf01a1e28,0xfbd8d8d9,0xffffffff,0xfefefefe,0xffffffff,0xdc969a94,0xc5292d27,
+- 0x83858982,0xff878c85,0xfe8a8e87,0xff5d625a,0xff82857f,0xffc4c6c3,0xffecedeb,0xffbdbfba,0xff6a6e67,0xe93e423c,0xdeb7b8b6,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc43d3f45,0xffffffff,0xfefefefe,0xfefefefe,0xfefefefe,0xfffefefe,0xf5fcfcfd,0xecc0c9dc,0xfd9daed1,0xff818ba1,0xff5f6c8a,0xff889ac2,0xff8899c0,0xfe9dacd0,0xff535c72,0xcb0f1119,0xf2dfdfdf,0xffffffff,0xffffffff,0xc7ffffff,0xf78a8e88,0x9321241f,
+- 0x37848881,0xff80847d,0xff888c85,0xff6b7068,0xff737870,0xffaaada8,0xffe6e7e5,0xffcbceca,0xff898d86,0xef343931,0xe58e8f8c,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff808ead,0xfd495268,0xe54f5668,0xfebcc4d5,0xf9bac0d2,0xfab9c0d2,0xfbbac1d2,0xeeb5bdcf,0xd894a3c1,0xf899abcf,0xff99a5ba,0xfe636e81,0xff7686ab,0xff8597bf,0xfea5b6d8,0xff8c9ab8,0xff292e3c,0xc0525356,0xf0f0f0f0,0xffffffff,0xffffffff,0xcadedfdd,0xf8626660,0x47272926,
+- 0x0,0xd27c8078,0xff81857e,0xfe7c817a,0xff696e66,0xff8e928b,0xffcbcdca,0xffd9dad8,0xfea7aba5,0xff5a5f56,0xe65b5f58,0xdbdfdfde,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xfe7786a5,0xff6c7893,0xff7d8cab,0xff808eb1,0xff8190b2,0xff8090b2,0xff8090b1,0xff8493b5,0xff9eaecd,0xffa0adc1,0xfe5d6573,0xff657390,0xff90a2c8,0xfeaabad8,0xffa5b4d0,0xff4a5265,0xe90c0d12,0xd4c5c4c5,0xf7ffffff,0xffffffff,0xf8ffffff,0xbd9a9e98,0xd8333732,0x3676868,
+- 0x0,0x51797d76,0xff787d75,0xff81857e,0xfe73776f,0xff787d75,0xffa3a5a0,0xffd4d6d3,0xffc1c4c0,0xff8e928b,0xf3464b42,0xcd7d807b,0xe0fcfdfc,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff8294ba,0xff58647d,0xff596276,0xff5d657a,0xff5e677b,0xff5e677b,0xff5f677c,0xff5e667a,0xff4e5667,0xff525a6c,0xfe8f9db8,0xfeacbcdc,0xffacbad6,0xff8390aa,0xfe3a4153,0xfa16181c,0xad7e7e7f,0xe9fbfbfb,0xffffffff,0xffffffff,0xa1c4c6c2,0xf5646762,0x6121221f,0x0,
+- 0x0,0x0,0xae747870,0xff787c74,0xff7d817a,0xfe747871,0xff848880,0xffacafaa,0xffc9ccc7,0xfeb1b5af,0xff7f847d,0xe4484d45,0xd29c9f9b,0xeefcfcfc,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff8597be,0xff92a3c9,0xff8b9bc0,0xff8797bb,0xff8697bb,0xff8394b8,0xff8090b5,0xff7c8eb3,0xff91a2c6,0xfea8b6d4,0xff707c95,0xff4b5469,0xfa353b4d,0xf01e212b,0xe3252527,0xcaa2a2a2,0xf5ffffff,0xffffffff,0xf2ffffff,0xeae4e6e4,0xf8828680,0xba282b27,0x3515154,0x0,
+- 0x0,0x0,0x1a73796f,0xd36f736b,0xff757a72,0xfe7b7e77,0xfe797d75,0xff898d86,0xffabaea9,0xffbbbeba,0xfea8aca6,0xff7e827b,0xec575c54,0xc6939791,0xdff0f0ef,0xfdffffff,0xffffffff,0xffffffff,0xcf93a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xfe92a3c8,0xffabbad6,0xff97a5c3,0xff94a1bf,0xff93a1bf,0xff8f9dbd,0xfe8c9cbe,0xff8698bc,0xff8e9fc3,0xff68748d,0xfe242937,0xfa2b2e37,0xd23c3e43,0xb9868786,0xccf3f3f3,0xf8ffffff,0xffffffff,0xf0f9faf9,0xc6d6d7d4,0xee7e817b,0xd8333731,0x23272a27,0x0,0x0,
+- 0x0,0x0,0x0,0x326d7069,0xd66a6f67,0xff70756d,0xff787d75,0xfe7d817a,0xff8a8e87,0xffa3a6a1,0xffafb2ac,0xfea2a69f,0xff848881,0xef5c6158,0xd9858882,0xe5d2d3d1,0xedfafaf9,0xffffffff,0xd095a1ba,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xffa3b3d3,0xfe66728b,0xfb2f3544,0xeb31384a,0xee333b4d,0xfc495369,0xff697693,0xfe7c8ba9,0xff7988a8,0xff626e88,0xfe616c86,0xef8490ab,0xcda5aec3,0xdbd5d8e1,0xf3fbfbfd,0xeaffffff,0xedededec,0xcbb7bab5,0xfd757972,0xde3a3d39,0x3d1f211e,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x36696e66,0xc5656a62,0xff6a6f67,0xff737870,0xfe7c8079,0xff888b84,0xff999c96,0xffa2a6a0,0xfe9ca09a,0xff8b8f88,0xff6d7169,0xe76c7068,0xda9fa39d,0xe9dadad6,0xd18a97af,0xf7a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496be,0xff8b9ab9,0xfd3b4255,0xdd212227,0xdd929397,0xdc8a8b90,0xdd747984,0xf95d6880,0xff6e7c9a,0xfe707d9a,0xfe697591,0xff6c7892,0xff6c7894,0xff687493,0xeb5d6985,0xd4969ba6,0xd4c2c4c1,0xda8c9089,0xff61655e,0xcd333731,0x401d1f1b,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x26636960,0xa160665d,0xf6646960,0xff6a6f67,0xff767a72,0xfe81857d,0xff8e928b,0xff999c96,0xfe989c95,0xfe90948d,0xff81857d,0xfe6c7068,0xe8777a70,0xea727e92,0xfca5b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8694b3,0xfc40475c,0xbe404249,0xffffffff,0xffffffff,0xdfffffff,0xd9a7adba,0xf462708e,0xff7b88a6,0xff687592,0xff687593,0xfe636e89,0xfe6b7791,0xff606c87,0xf94a5367,0xff5c6161,0xfb51544e,0xa9262924,0x2c171a15,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0xd63685f,0x695d6258,0xc95d6259,0xff60655d,0xff686d65,0xff737870,0xfe80837c,0xff8b8f88,0xff91958e,0xfe91968f,0xff8d918b,0xff84877d,0xff747f90,0xffa5b4d6,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfd40475c,0xd0383a3f,0xd6dddedb,0xe8d8d9d7,0xb9cdceca,0xb5b0b3b3,0xe869748a,0xff717f9e,0xff7784a1,0xff7e8fb3,0xff8496bd,0xff7281a2,0xfe66738e,0xff515c74,0xff3d434f,0x7f252928,0xe121206,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x2d5b5f56,0x79585d54,0xcf585e55,0xff5a5f57,0xff61665e,0xff6b7068,0xff767b73,0xfe80847c,0xff878b84,0xff8c9087,0xff798497,0xffa5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40485c,0xf33c3f41,0xdf92968f,0xed959993,0xcd848881,0xe08d918a,0xf983898f,0xff6d7a98,0xff7784a1,0xff717f9e,0xff8698c0,0xff8799c1,0xff7584a4,0xff626e89,0xff495267,0x68505869,0x3dae3fe,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x366685c,0x2d535850,0x65535850,0xae535850,0xf352584f,0xff555a51,0xff5b6058,0xff636860,0xff6c7066,0xff6e7a8c,0xfea5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40485c,0xff3e4143,0xff898d85,0xff81857d,0xff7c8079,0xff72766e,0xff616662,0xff576071,0xff7380a0,0xfe7884a2,0xff7888ab,0xff8799c1,0xff8293b9,0xfe6d7a98,0xff56617a,0xe5495264,0x2f565b6a,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1b4f544c,0x374c5149,0x664e524a,0xa04d5249,0xd54c5249,0xff4b4e44,0xff5f6a7c,0xffa4b3d5,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40475b,0xff2a2d2e,0xff51554c,0xff484c44,0xff41453e,0xff3c4039,0xd5363b33,0xc1444c53,0xf26e7b99,0xff74819e,0xff7482a1,0xff8496bd,0xff8698c0,0xff7a8aac,0xff677490,0xff4b556b,0x9d4e5566,0xe555b67,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x35b5f58,0x14494e46,0x22464b43,0x2534351d,0xb86d7b97,0xfba6b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40475b,0xde23262a,0x833d4038,0x6d3a3d37,0x4d393d36,0x3032352e,0x2026291f,0x29585f68,0xa2697591,0xff717f9e,0xfe7684a1,0xff7686a8,0xff8699c0,0xff8597be,0xfe6f7d9b,0xff5f6b85,0xff474f63,0x4b575d6c,0x2c9cccc,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a5,0xfaa7b6d9,0xff535c72,0xff7e90b6,0xff8295bc,0xff8294bc,0xff8593b2,0xfd40485c,0xb6292b32,0x28c8941,0x6434641,0x0,0x0,0x0,0x0,0x4d67728c,0xee6e7b97,0xff727f9c,0xfe7582a1,0xff8192b8,0xff8396be,0xff7e8fb3,0xfe687490,0xff4f5a72,0xd14a5264,0x14525869,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a4,0xfaa7b6d9,0xff717d97,0xffa5b5d7,0xffabbadd,0xffabbadd,0xff9faecd,0xfd40475c,0xb22a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0xe9099aa,0x9766728e,0xff727f9e,0xfe8492b0,0xff9aa8ca,0xffadbcdf,0xffacbbde,0xfe9eadcc,0xff7f8ca8,0xff4a5369,0x76545b69,0x6616670,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa37a8bac,0xfc72809c,0xff515b72,0xff515a71,0xff515b72,0xff515b72,0xff505a71,0xfe3a4255,0xb32a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x486c7690,0xe267738f,0xff56627b,0xff4c566b,0xff4e586e,0xff4e586e,0xff4e576d,0xff4d576c,0xff465065,0xf9434c5d,0x27616977,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x7e697289,0xcc393d48,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd931353e,0x983d4047,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x8ddebff,0x77525868,0xd4393d47,0xca2f323a,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xd0343741,0x7a5a606c,0x6686e7b,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
+- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
++99, 77,0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00ffffff,
++0x00ffffff,
++0x00fbfafa,
++0x00d3caca,
++0x00ffffff,
++0x00000000,
++0x00bfbcc4,
++0x01bcb9c2,
++0x08bcbfc1,
++0x10bfc1c3,
++0x1dbec1c4,
++0x32c0c2c5,
++0x48c3c4c7,
++0x5ac5c7ca,
++0x6ac4c6ca,
++0x7cc3c5c8,
++0x8bc1c4c6,
++0x97c0c2c5,
++0x9fbfc1c4,
++0xa4bec0c3,
++0xa5bdbfc3,
++0xa3bdbfc2,
++0x9dbdbec2,
++0x93bdbfc2,
++0x86bdbfc2,
++0x76bdbfc3,
++0x65bdc0c3,
++0x55bcbec1,
++0x41b8babd,
++0x2bb7b8bc,
++0x17b5b6ba,
++0x0db4b6b9,
++0x05b5bab9,
++0x00dfebd3,
++0x00bec4bf,
++0x00000000,
++0x00000000,
++0x00b5b5b5,
++0x00787878,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00fefefe,
++0x00f4f4f3,
++0x00c2c2bd,
++0x00000000,
++0x00bec3c1,
++0x00d3d8ee,
++0x05bec4c2,
++0x12c3c5c7,
++0x2dc3c5c8,
++0x50c6c9cb,
++0x73c6c8cc,
++0x99c4c7ca,
++0xb5c7cacd,
++0xccc7c9cc,
++0xe0c4c6c9,
++0xedc2c5c8,
++0xf1c4c7ca,
++0xf5c4c7ca,
++0xf8c3c6c9,
++0xfbc2c4c7,
++0xfdc0c3c6,
++0xfebfc1c5,
++0xfebec0c4,
++0xffbec0c3,
++0xfebdbfc3,
++0xfdbdbfc3,
++0xfcbdbfc3,
++0xfabdbfc3,
++0xf7bec0c3,
++0xf4bdbfc3,
++0xf0bbbdc1,
++0xeab9bbbf,
++0xdababcc0,
++0xc5bcbec1,
++0xadb9bbbf,
++0x8eb6b8bc,
++0x67b7b9bd,
++0x46b5b7bb,
++0x23b1b2b8,
++0x0db0b0b8,
++0x02b2b0b5,
++0x00b3b2b5,
++0x00a5a597,
++0x00a1a195,
++0x00b4b4b1,
++0x00e9e9ea,
++0x00fcfcfc,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00ffffff,
++0x00ededed,
++0x00c7c7c7,
++0x00aeaeae,
++0x00bdc1c6,
++0x02bec2c6,
++0x0fc4c7c8,
++0x30c7c9cb,
++0x60c8cacd,
++0x95c6c9cb,
++0xc1c9cbce,
++0xe2c6c9cc,
++0xf4c6c9cb,
++0xfbc6c9cc,
++0xffc4c6c9,
++0xffc2c5c8,
++0xffc2c5c8,
++0xffc1c4c7,
++0xffc0c2c5,
++0xffbfc2c5,
++0xfebec1c4,
++0xfebec0c3,
++0xfebdc0c3,
++0xfebdbfc2,
++0xfebcbec2,
++0xfebcbec1,
++0xfebbbdc1,
++0xfebbbdc0,
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++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x001f67b7,
++0x001f68b8,
++0x002066ba,
++0x562065b7,
++0xe22167bb,
++0xe62065b9,
++0xe72066b9,
++0xe92066b8,
++0xea2066b8,
++0xed1f65b7,
++0xf01f63b6,
++0xf31e63b5,
++0xf61e63b4,
++0xf91e62b4,
++0xfc1e62b2,
++0xfe1e61b2,
++0xfe1d61b2,
++0xfe1d61b2,
++0xfe1d61b2,
++0xff1d62b2,
++0x811d61b2,
++0x01004ea8,
++0x00001882,
++0x000055aa,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x00000000,
++0x000000ff,
++0x00004ab5,
++0x002e64bc,
++0x471a5faf,
++0xed1a60b0,
++0xff1a5eac,
++0xfe195dac,
++0xfe195dac,
++0xfe195dac,
++0xfe195dac,
++0xfe195dac,
++0xfe195dab,
++0xfe195dab,
++0xfe195dab,
++0xfe195dab,
++0xfe185cab,
++0xfd185cab,
++0xfc185caa,
++0xfb185caa,
++0xf9185cab,
++0xf8185cab,
++0xf9185dac,
++0xb9185ead,
++0x15165ba9,
++0x003e9289,
++0x000036bc,
++0x00000000,
+ };
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..552b27d
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,5 @@
+# format version number, currently 2; this line is compulsory!
+version=2
+
+# This is one format for an HTTP site, which is the same as the FTP format
+http://cran.r-project.org/src/base/R-3/R-([-0-9\.]*).tar.gz